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(S)-(-)-5-Fluorowillardiine hydrochloride

Cat No.:V33228 Purity: ≥98%
(S)-(-)-5-Fluorowillardiine HCl is a highly efficient and selective AMPAR agonist.
(S)-(-)-5-Fluorowillardiine hydrochloride
(S)-(-)-5-Fluorowillardiine hydrochloride Chemical Structure CAS No.: 1321546-70-6
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of (S)-(-)-5-Fluorowillardiine hydrochloride:

  • (S)-(-)-5-Fluorowillardiine
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Top Publications Citing lnvivochem Products
Product Description
(S)-(-)-5-Fluorowillardiine HCl is a highly efficient and selective AMPAR agonist. (S)-(-)-5-Fluorowillardiine, also known as 3-(5-fluorouracil-1-yl)-L-alanine, is a non-proteinogenic amino acid derivative and a highly potent and selective agonist of AMPA-type glutamate receptors . Structurally, it is a willardiine analog featuring a fluorine atom substitution at the C5 position of the uracil ring . This compound serves as an essential pharmacological tool in neuroscience research, particularly for studying AMPA receptor subunit-specific pharmacology and function . Due to its excitotoxic properties, it is primarily utilized in in vitro assays rather than in vivo studies .
Biological Activity I Assay Protocols (From Reference)
Targets
The primary molecular targets of (S)-(-)-5-Fluorowillardiine are the AMPA (α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) subtype of ionotropic glutamate receptors. It acts as a potent agonist, directly activating these receptors . The compound exhibits significant subunit selectivity, showing high affinity for subunits GluR1 (Kd ~3-4 nM) and GluR2 (Kd ~7-12 nM), while displaying lower affinity for GluR3 and GluR4 subunits (Kd ~150-800 nM) . The activation of AMPA receptors by (S)-(-)-5-Fluorowillardiine leads to sodium and calcium ion influx, resulting in neuronal depolarization and downstream signaling events.
ln Vitro
In vitro studies have demonstrated that (S)-(-)-5-Fluorowillardiine is a more potent AMPA receptor agonist than AMPA itself. Its binding affinity (Ki) values are 14.7 nM for human GluR1, 25.1 nM for human GluR2, and 1820 nM for human GluR5 . Radioligand binding studies using [³H]Fluorowillardiine in rat brain membranes revealed two affinity components: a high-affinity site with a Kd of approximately 20 nM and a low-affinity site with a Kd of approximately 1 μM, with low-affinity sites accounting for about 90% of all binding sites . The compound's binding is greatly skewed in favor of GluR1 and GluR2 subunits due to its subunit preference, making it a valuable tool for studying AMPA receptor composition and pharmacology .
ln Vivo
(S)-(-)-5-Fluorowillardiine is identified as an excitotoxic neurotoxin when used in vivo, which consequently limits its application in intact animal studies . Because of this toxicity, it is rarely used in living animal models for therapeutic or functional studies. Its primary value lies in its application as a precise pharmacological probe to selectively stimulate AMPA receptors in isolated tissue preparations or in vitro systems . As a discovery agent, it remains an investigative tool rather than a therapeutic candidate .
Enzyme Assay
Binding assays for (S)-(-)-5-Fluorowillardiine are typically performed using rat brain membrane preparations or recombinant homomeric AMPA receptors expressed in HEK293 cells . A standard saturation binding protocol involves incubating membranes with varying concentrations of [³H]Fluorowillardiine (e.g., 3–2000 nM) for 60 minutes at 25°C (or at 0°C) . Incubations are terminated by centrifugation, followed by rinsing of membrane pellets. The pellets are then dissolved, and radioactivity is measured by scintillation counting . Nonspecific binding is determined in the presence of 5 mM L-glutamate. Data analysis is performed using nonlinear regression to determine Kd and Bmax values . For competition binding experiments, displacement of [³H]CNQX (40 nM) by unlabeled Fluorowillardiine is measured under similar conditions .
Cell Assay
Cellular assays using (S)-(-)-5-Fluorowillardiine are primarily conducted as binding studies on cell membrane preparations rather than functional cell viability or signaling assays . A representative protocol for studies on recombinant homomeric AMPA receptors (GluR1-4) expressed in HEK293 cells is as follows: Permeabilized cells are incubated with [³H]Fluorowillardiine at 0°C . Binding is terminated by filtration through glass fiber filters, followed by rapid washing with chilled buffer containing thiocyanate to minimize ligand dissociation. Nonspecific binding is defined with 5 mM glutamate . The compound is not typically used in standard cytotoxicity or proliferation assays but rather as a radioligand for receptor occupancy studies.
Animal Protocol
Due to its identified excitotoxic neurotoxicity, this compound is rarely, if ever, used in intact animal models for therapeutic or pharmacodynamic evaluation . Its usage is virtually exclusive to in vitro preparations designed to study AMPA receptor function in isolated systems, such as brain slices or primary neuronal cultures. Consequently, no analgesic, anti-cancer, or other therapeutic efficacy data from animal models is available for this compound.
ADME/Pharmacokinetics
As a research tool compound and not a therapeutic candidate, detailed ADME (Absorption, Distribution, Metabolism, Excretion) profiling has not been performed. Its physicochemical properties have been computationally predicted: LogP value is -1.54, and LogD (pH 7.4) is -4.26, indicating high hydrophilicity . The polar surface area is 113 Ų . The compound has a molecular weight of 217.15 g/mol and follows Lipinski's Rule of 5 with one violation .
Toxicity/Toxicokinetics
The primary recognized toxicity of (S)-(-)-5-Fluorowillardiine is its excitotoxic neurotoxicity . As a potent AMPA receptor agonist, excessive receptor activation can lead to neuronal cell death via excitotoxic mechanisms, involving calcium overload and downstream degenerative pathways. This property is the principal limitation for its use in living animals. No specific data on acute toxicity (LD50), chronic toxicity, genotoxicity, or reproductive toxicity is available in standard pharmacological databases. The compound is classified as an investigative discovery agent and is strictly intended for research use only, not for human therapeutic or diagnostic applications .
References

[1]. Effects of thiocyanate and AMPA receptor ligands on (S)-5-fluorowillardiine, (S)-AMPA and (R,S)-AMPA binding. Eur J Pharmacol. 1997 Jun 25;329(2-3):213-21.

[2]. Use of [3H]fluorowillardiine to study properties of AMPA receptor allosteric modulators. Brain Res. 2006 Mar 3;1076(1):25-41.

[3]. Antisense peptide nucleic acid targeting GluR3 delays disease onset and progression in the SOD1 G93A mouse model of familial ALS. J Neurosci Res. 2004 Aug 15;77(4):573-82.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C7H9CLFN3O4
Molecular Weight
253.6155
Exact Mass
253.026
CAS #
1321546-70-6
Related CAS #
(S)-(-)-5-Fluorowillardiine;140187-23-1
PubChem CID
92044399
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
3
Heavy Atom Count
16
Complexity
354
Defined Atom Stereocenter Count
1
SMILES
C1=C(C(=O)NC(=O)N1C[C@@H](C(=O)O)N)F.Cl
InChi Key
TXWOAFHJFQTAEW-WCCKRBBISA-N
InChi Code
InChI=1S/C7H8FN3O4.ClH/c8-3-1-11(2-4(9)6(13)14)7(15)10-5(3)12;/h1,4H,2,9H2,(H,13,14)(H,10,12,15);1H/t4-;/m0./s1
Chemical Name
(2S)-2-amino-3-(5-fluoro-2,4-dioxopyrimidin-1-yl)propanoic acid;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ~6.67 mg/mL (~26.30 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.9429 mL 19.7145 mL 39.4291 mL
5 mM 0.7886 mL 3.9429 mL 7.8858 mL
10 mM 0.3943 mL 1.9715 mL 3.9429 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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