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Radicicol (Monorden)

Alias: Radicicol Monorden
Cat No.:V8531 Purity: ≥98%
Radicicol (Monorden),an antifungal antibiotic with antimalarial activity, is a potent Hsp90 N-terminal inhibitor with an IC50 value of 1 μM.
Radicicol (Monorden)
Radicicol (Monorden) Chemical Structure CAS No.: 12772-57-5
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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5mg
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Radicicol (Monorden), an antifungal antibiotic with antimalarial activity, is a potent Hsp90 N-terminal inhibitor with an IC50 value of 1 μM. It binds to the ATPase domain of Hsp90 and prevents maturation of Hsp90 clients, leading to proteasomal degradation. Radicicol impairs mitochondrial replication by targeting P. falciparum topoisomerase VIB.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
By preventing ATP binding, radiciccol (1 μM or 100 μM) suppresses the activity of Hsp90 and Topo VI [1]. At 100 μM for 10 minutes, radicol binds to the ATP binding site PDK3's C-terminal domain, blocking Hsp90 [1]. At 0.25–18 μM for 48 hours, radicol inhibits P. falciparum growth with an IC50 value of 8.563 μM, and at 8 μM for 50 hours, radicol slows the cleavage-to-ring transition [2]. μM; 40 h) fluorescence probe DNA replication that doesn't interfere with the plastid genome's underlying nucleus [2]. Muscle cells are induced with a hazardous concentration of 0.1 μM by radiciccol (0.001-5 μM; 72 h) [5].
ln Vivo
Radicicol (0.05 mg/20 g; subcutaneous injection; single dose) improves regeneration of rattlesnake-injured skeletal muscle by reducing NF-kB activation. Radicicol (20 mg/kg or 60 mg/kg; intraperitoneal injection; 2 times; left and right 1 h) has a renal protective effect, improves renal ischemia-reperfusion (I/R) injury, and increases renal injury renal injury HSP70 mRNA [5].
Cell Assay
Cell Viability Assay[2]
Cell Types: Plasmodium falciparum 3D7
Tested Concentrations: 0.25 μM, 0.75 μM, 2 μM, 4 μM, 6 μM, 8 μM, 10 μM, 14 μM, 17 μM
Incubation Duration: 48 hrs (hours)
Experimental Results: Displayed for Dose-dependent inhibition of parasite growth.

Cytotoxicity assay [5]
Cell Types: primary myoblasts (from mouse hindlimb muscle)
Tested Concentrations: 0.001, 0.01, 0.1, 1, 5 μM
Incubation Duration: 72 hrs (hours)
Experimental Results: Induced myoblast differentiation but not myogenesis The highest concentration of cytotoxicity is 0.1 micron.
Animal Protocol
Animal/Disease Models: Renal I/R injury models and proteins [4]. Mouse[4]
Doses: 20 mg/kg or 60 mg/kg
Route of Administration: intraperitoneal (ip) injection; two doses; 1 hour before and after bilateral renal ischemia-reperfusion (I/R)
Experimental Results: shown by inducing renal HSP70 expression Exudes renal protection.

Animal/Disease Models: Male C57B1/6 mice (3 months old, 25±2g) [5]
Doses: 0.05mg/20g
Route of Administration: subcutaneous injection; single dose; CTX before injury (about 1 minute); 1st after injection Results were assessed on day 10 or day 10: Heat shock protein induction and diminished NF-kB activation in crotonin-injured muscles at day 10. Improves size recovery of regenerated muscle fibers and reduces NF-kB activation.
References
[1]. Kato M, et al. Distinct structural mechanisms for inhibition of pyruvate dehydrogenase kinase isoforms by AZD7545, dichloroacetate, and radicicol. Structure. 2007 Aug;15(8):992-1004. Epub 2007 Aug 2.
[2]. Chalapareddy S, et al. Radicicol confers mid-schizont arrest by inhibiting mitochondrial replication in Plasmodium falciparum. Antimicrob Agents Chemother. 2014 Aug;58(8):4341-52.
[3]. Wang R, et al. Identification of Natural Compound Radicicol as a Potent FTO Inhibitor. Mol Pharm. 2018 Sep 4;15(9):4092-4098.
[4]. Sonoda H, et al. The protective effect of radicicol against renal ischemia--reperfusion injury in mice. J Pharmacol Sci. 2010;112(2):242-6.
[5]. Nascimento TL, et al. Radicicol enhances the regeneration of skeletal muscle injured by crotoxin via decrease of NF-kB activation. Toxicon. 2019 Sep;167:6-9.
Additional Infomation
Radicicol is an antifungal macrolactone antibiotic, obtained from Diheterospora chlamydosporia and Chaetomium chiversii that inhibits protein tyrosine kinase and heat shock protein 90 (Hsp90). It has a role as a tyrosine kinase inhibitor, an antifungal agent and a metabolite. It is a macrolide antibiotic, an epoxide, an enone, a cyclic ketone, a member of phenols and a member of monochlorobenzenes.
Radicicol has been reported in Fusarium neocosmosporiellum, Floropilus chiversii, and other organisms with data available.
Radicicol is a macrocyclic antifungal antibiotic that inhibits signal-dependent transcriptional activation and induces differentiation in leukemia. (NCI)
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H17CLO6
Molecular Weight
364.77698
Exact Mass
364.071
CAS #
12772-57-5
PubChem CID
6323491
Appearance
White to off-white solid powder
Density
1.4±0.1 g/cm3
Boiling Point
656.2±55.0 °C at 760 mmHg
Melting Point
190-194ºC
Flash Point
350.7±31.5 °C
Vapour Pressure
0.0±2.0 mmHg at 25°C
Index of Refraction
1.583
LogP
1.53
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
0
Heavy Atom Count
25
Complexity
588
Defined Atom Stereocenter Count
3
SMILES
C[C@@H]1C[C@@H]2[C@@H](C=CC=CC(=O)CC3=C(C(=CC(=C3Cl)O)O)C(=O)O1)O2
InChi Key
WYZWZEOGROVVHK-RFVWBQTHSA-N
InChi Code
InChI=1S/C18H17ClO6/c1-9-6-15-14(25-15)5-3-2-4-10(20)7-11-16(18(23)24-9)12(21)8-13(22)17(11)19/h2-5,8-9,14-15,21-22H,6-7H2,1H3/b4-2+,5-3-/t9-,14+,15+/m0/s1
Chemical Name
(1aR,2Z,4E,14S,15aR)-8-Chloro-9,11-dihydroxy-14-methyl-1a,14,15,15a-tetrahydro-6H-benzo[c]oxireno[2,3-k][1]oxacyclotetradecine-6,12(7H)-dione
Synonyms
Radicicol Monorden
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~274.14 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7414 mL 13.7069 mL 27.4138 mL
5 mM 0.5483 mL 2.7414 mL 5.4828 mL
10 mM 0.2741 mL 1.3707 mL 2.7414 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Inhibition of PDK1 and PDK3 Activities by AZD7545, Radicicol, and DCA (A) IC50 for AZD7545, SUMO-PDK1, or SUMO-PDK3 (50 nM each) in the presence of E1p bound to the E2p/E3BP core was titrated with increasing concentrations of AZD7545 in 2% DMSO as indicated. Following an incubation of 30 min, residual kinase activity was assayed as described in Experimental Procedures. PDK activity is expressed as % maximal (8.2 nmol/min/mg for PDK1; 63.6 nmol/min/mg for PDK3; both measured in 2% DMSO). Inhibition curves were fitted and IC50 values were obtained using the Prism program (GraphPad Software, San Diego, CA, USA). (B) IC50 for radicicol. For titrations with radicicol, 0.56 μM SUMO-PDK1 or 0.28 μM SUMO-PDK3 was used. The remaining conditions are also described in Experimental Procedures. (C) Inhibition of PDK1 and PDK3 by AZD7545, DCA, and radicicol with the E1p substrate on the E2p/E3BP core. Inhibitor concentrations used were 5- to 40-fold higher than the respective IC50 or Ki values. Following incubation for 30 min, kinase activity was assayed as in (A), and residual activity levels are expressed as % control. Control activities for PDK1 and PDK3 in 2% DMSO are as in (A). Control activity without DMSO for DCA inhibition is 9.7 nmol/min/mg for PDK1 and 91.9 nmol/min/mg for PDK3. The bars in (C) and (D) represent averages of two independent experiments.[1].Kato M, et al. Distinct structural mechanisms for inhibition of pyruvate dehydrogenase kinase isoforms by AZD7545, dichloroacetate, and radicicol. Structure. 2007 Aug;15(8):992-1004. Epub 2007 Aug 2.
  • Structures of PDK1 and PDK3-L2 in Complex with Inhibitors (A) The dimeric structures of apo-PDK1 with superimposed AZD7545 and DCA bound to PDK1. Each PDK1 subunit is represented as a ribbon model (green and cyan). AZD7545 and DCA molecules bound to each PDK1 subunit are shown in space-filling models. The fully ordered ATP lid is colored in yellow. The partially ordered C-terminal tails in the crossed configuration are colored in magenta. (B) The PDK3-L2 dimer with radicicol bound to the ATP-binding pocket. Both PDK3 subunits are shown in green and cyan. The bound L2 domains are colored in yellow, with the lipoyl group shown in a space-filling model. Radicicol molecules bound to each PDK3 subunit are also shown in the same model. The fully ordered C-terminal tails are in magenta. The red arrows in (A) and (B) indicate the active-site clefts of these kinases. Stereo figures of the Cα traces for the PDK1 and PDK3-L2 structures are shown in Figure S1.[1].Kato M, et al. Distinct structural mechanisms for inhibition of pyruvate dehydrogenase kinase isoforms by AZD7545, dichloroacetate, and radicicol. Structure. 2007 Aug;15(8):992-1004. Epub 2007 Aug 2.
  • Structure of the Radicicol-Binding Site in PDK3-L2 (A) The omit electron density map of radicicol bound to PDK3. The density is superimposed on the refined model of radicicol at the 3σ level in blue and the 9σ level in red. (B) Interactions between PDK3 residues and radicicol. H bonds are indicated by dashed lines. Water molecules are depicted as red balls. (C) Comparison between radicicol and ATP bound to PDK3. The structure of PDK3-L2-ATP (PDB ID code 1Y8P; Kato et al., 2005) (magenta) is superimposed on PDK3-L2-radicicol (cyan). (D) Superimposition of radicicol molecules bound to PDK1 (cyan), Hsp90 (PDB ID code 1BGQ; Roe et al., 1999) (pink), and Topo VI (PDB ID code 2HKJ; Corbett and Berger, 2005) (yellow). The three structures were superimposed based on the corresponding residues shown in the figure. Stereo figures of (B)–(D) are provided in Figure S4. (E) Comparison of the shape of the radicicol-binding pockets of PDK3, Hsp90, and Topo VI. The electrostatic surface of each protein is shown with the negative charge in red and the positive charge in blue.[1].Kato M, et al. Distinct structural mechanisms for inhibition of pyruvate dehydrogenase kinase isoforms by AZD7545, dichloroacetate, and radicicol. Structure. 2007 Aug;15(8):992-1004. Epub 2007 Aug 2.
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