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R306465

Alias: R 306465 JNJ-16241199R306465 JNJ16241199 R-306465JNJ 16241199.
Cat No.:V5627 Purity: ≥98%
R306465, formerly known as JNJ-16241199, is a novel and potent inhibitor of hydroxamate-based histone deacetylase (HDAC) with broad-spectrum antitumour activity against solid and haematological malignancies in preclinical models.
R306465
R306465 Chemical Structure CAS No.: 604769-01-9
Product category: New12
This product is for research use only, not for human use. We do not sell to patients.
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Product Description

R306465, formerly known as JNJ-16241199, is a novel and potent inhibitor of hydroxamate-based histone deacetylase (HDAC) with broad-spectrum antitumour activity against solid and haematological malignancies in preclinical models.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
JNJ-16241199's effect on leukemia (ALL), acute myeloid leukemia (AML), chronic myeloid leukemia (CLL), chronic myeloid leukemia (CML), acute, and myeloma cell proliferation (IC50 = 15). JNJ-16241199 inhibits primary human mammary epithelial cells' proliferation with an IC50 value of 32 nM, while being insensitive to HMEC cells that are at rest and not actively proliferating (IC50 value of 7815 nM) [1]. -486 nanometers) [1]. In A2780 cells, -16241199 (0.1, 0.3, 1 μM, 24-48 h) can both stimulate and inhibit angiogenesis [1].
ln Vivo
In orthotopic xenograft tumor models of A2780 ovarian cancer, H460 lung cancer, and HCT116 cancer, JNJ-16241199 (10–40 mpk daily for 28 days, po) suppresses the growth of tumors [1].
Cell Assay
Cell cycle analysis [1]
Cell Types: human ovarian cancer cell A2780
Tested Concentrations: 0, 0.1, 0.3, 1 μM
Incubation Duration: 24 hrs (hours) or 48 hrs (hours)
Experimental Results: At 300 nM, the S phase diminished and the G1 phase increased in parallel, but after 24 hrs (hours) The sub-G1 fraction of cells increased at 1 μM. After 48 hrs (hours), there was an increase in the sub-G1 phase at all active concentrations starting from 100 nM.
Animal Protocol
Animal/Disease Models: Human A2780, H460 and HCT116 orthotopic xenograft tumor model [1]
Doses: 10-40 mpk/day for 28 days
Route of Administration: po (oral gavage)
Experimental Results: Induction of H3 in A2780 ovarian tumor tissue Acetylation and p21waf1, cip1 promoter activity. Tumor volume reduction in three orthotopic xenograft tumor models. In the human A2780 orthotopic xenograft tumor model, the final tumor volume was diminished to a maximum of 76-87%.
References

[1]. R306465 is a novel potent inhibitor of class I histone deacetylases with broad-spectrum antitumoral activity against solid and haematological malignancies. Br J Cancer. 2007;97(10):1344-1353.

Additional Infomation
R306465 has been used in trials studying the treatment of Neoplasms.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H19N5O4S
Molecular Weight
413.45026
Exact Mass
413.115
CAS #
604769-01-9
PubChem CID
10309899
Appearance
White to off-white solid powder
Density
1.5±0.1 g/cm3
Index of Refraction
1.689
LogP
2.06
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
4
Heavy Atom Count
29
Complexity
669
Defined Atom Stereocenter Count
0
SMILES
O=C(C1=CN=C(N2CCN(S(=O)(C3=CC=C4C=CC=CC4=C3)=O)CC2)N=C1)NO
InChi Key
MUTBJZVSRNUIHA-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H19N5O4S/c25-18(22-26)16-12-20-19(21-13-16)23-7-9-24(10-8-23)29(27,28)17-6-5-14-3-1-2-4-15(14)11-17/h1-6,11-13,26H,7-10H2,(H,22,25)
Chemical Name
N-hydroxy-2-(4-(naphthalen-2-ylsulfonyl)piperazin-1-yl)pyrimidine-5-carboxamide
Synonyms
R 306465 JNJ-16241199R306465 JNJ16241199 R-306465JNJ 16241199.
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4187 mL 12.0934 mL 24.1867 mL
5 mM 0.4837 mL 2.4187 mL 4.8373 mL
10 mM 0.2419 mL 1.2093 mL 2.4187 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT00677001 COMPLETED Drug: R306465 Neoplasms Johnson & Johnson Pharmaceutical Research & Development, L.L.C. 2005-09 Phase 1
Biological Data
  • Substrate selectivity of R306465. Human A2780 ovarian carcinoma cells were incubated with the indicated concentrations of R306465, vorinostat, panobinostat, MS-275 or Trichostatin A (TSA) for 24 h. Total cell lysates were prepared and analysed by SDS–PAGE. Levels of acetylated H3 and tubulin, and of total levels of H3 and tubulin and of p21waf1, cip1 and Hsp70 and c-raf protein, were detected using rabbit polyclonal and mouse monoclonal antibodies, followed by ECL detection as indicated in the Methods section. To control for equal loading, blots were stripped and re-probed with antibodies against actin and the nuclear protein Lamin B1. A representative experiment out of three is shown.[1].Arts J, et al. R306465 is a novel potent inhibitor of class I histone deacetylases with broad-spectrum antitumoral activity against solid and haematological malignancies. Br J Cancer. 2007;97(10):1344-1353.
  • Antiproliferative activity of R306465. Human tumour cell lines were seeded at low cell density and after 24 h cells were incubated with R306465 at 3 × 10−9, 10−8, 3 × 10−7, 10−6, 3 × 10−6 and 10−5 m. The number of viable cells after a 4-day incubation period was assessed using a standard MTT colorimetric assay or Alamar Blue assay as indicated in the Methods section. Values represent mean±s.d. of three independent experiments. For haematological tumour cell lines, IC40 values (concentrations leading to 40% inhibition of cell proliferation) were determined for technical reasons: (ALL) acute lymphoblastic leukaemia; (AML) acute myeloid leukaemia; (CLL) chronic lymphoblastic leukaemia – EHEB (chronic B cell leukaemia); and (CML) chronic myeloid leukaemia.[1].Arts J, et al. R306465 is a novel potent inhibitor of class I histone deacetylases with broad-spectrum antitumoral activity against solid and haematological malignancies. Br J Cancer. 2007;97(10):1344-1353.
  • R306465 induces apoptosis in human A2780 ovarian carcinoma cells and inhibits angiogenesis. (A) A2780 ovarian carcinoma cells were incubated with the indicated concentrations of R306465 for 48 h. Cells were stained with Annexin V (Pharmingen) and propidium iodide, and analysed by FACS. Apoptotic cells show Annexin V binding on the plasma membrane, but cells are intact and therefore do not stain for propidium iodide. Membrane-damaged cells were defined as both Annexin V- and propidium iodide-positive. Shown are mean values±variation for two independent experiments. Inset: cells incubated with R306465 (100 nm) were stained for DNA breaks using TUNEL dUTP labelling followed by peroxidase staining. Green asterisks represent mitotic cells, while red arrows point at specific DNA fragmentation. (B) Rat Aortic Ring Assays were performed as described in the Methods section. Aortic rings were incubated with either solvent or with the indicated concentrations of R306465 for 8 days and the average microvessel area for five independent rings was quantified.[1].Arts J, et al. R306465 is a novel potent inhibitor of class I histone deacetylases with broad-spectrum antitumoral activity against solid and haematological malignancies. Br J Cancer. 2007;97(10):1344-1353.
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