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Propargyl-PEG8-amine

Cat No.:V7960 Purity: ≥98%
Propargyl-PEG8-NH2 (compound 3b) is a PROTAC bridge of the Polyethylene glycol (PEG) category.
Propargyl-PEG8-amine
Propargyl-PEG8-amine Chemical Structure CAS No.: 1196732-52-1
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
250mg
Other Sizes
Official Supplier of:
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Product Description
Propargyl-PEG8-NH2 (compound 3b) is a PROTAC bridge of the Polyethylene glycol (PEG) category. Propargyl-PEG8-NH2 may be utilized to prepare a veriety of PROTAC protein degraders. Propargyl-PEG8-NH2 is a non-cleavable (non-degradable) ADC bridge used for the synthesis of antibody active molecule conjugates (ADCs). Propargyl-PEG8-NH2 is a reagent for click chemistry. It has Alkyne groups and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing Azide groups.
Propargyl-PEG8-amine is a heterobifunctional polyethylene glycol (PEG) linker containing a propargyl (alkyne) group and a primary amine group. It has a molecular formula and a molecular weight of 407.5 g/mol. This compound is widely used as a reagent for click chemistry, specifically for copper-catalyzed azide-alkyne cycloaddition (CuAAC) reactions with compounds bearing azide groups. The amine group is reactive with carboxylic acids, activated NHS esters, and carbonyls (ketones, aldehydes), enabling bioconjugation to various biomolecules.
Biological Activity I Assay Protocols (From Reference)
Targets
Propargyl-PEG8-amine is a chemical linker that targets functional groups on biomolecules rather than biological receptors. Its propargyl (alkyne) group serves as a reaction partner for azide-containing compounds in CuAAC click chemistry reactions. The amine group reacts with carboxylic acids, activated NHS esters, and carbonyl groups, enabling covalent attachment to proteins, peptides, and other biomolecules. The PEG8 spacer provides hydrophilicity and flexibility, reducing aggregation and improving solubility in aqueous media. The compound is used as a non-cleavable ADC linker for antibody-drug conjugate synthesis.
ln Vitro
Two distinct ligands, one for the E3 ubiquitin ligase and the other for the target protein, are present in PROTAC and are joined by a linker. PROTAC targets and selectively degrades target proteins by means of the intracellular ubiquitin-proteasome system. An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC.
In vitro, Propargyl-PEG8-amine is used as a chemical reagent in bioconjugation reactions rather than as a bioactive compound with intrinsic biological activity. The compound's alkyne group undergoes CuAAC reactions with azide-functionalized molecules, enabling the formation of stable triazole linkages. The amine group enables conjugation to carboxylate-containing molecules via amide bond formation using coupling reagents such as EDC or HATU, or to NHS ester-activated molecules. The PEG8 spacer imparts hydrophilicity to conjugates, improving their solubility and reducing non-specific interactions.
ln Vivo
In vivo, Propargyl-PEG8-amine is not typically used as a therapeutic agent but rather as a linker component in the synthesis of drug conjugates and biomaterials. When incorporated into antibody-drug conjugates (ADCs) or other drug delivery systems, the PEG linker contributes to the pharmacokinetic properties of the conjugate. The hydrophilic PEG spacer reduces immunogenicity and extends circulation half-life by decreasing renal clearance and opsonization. The compound's in vivo behavior is determined by the specific conjugate in which it is incorporated rather than by the linker itself.
Enzyme Assay
In vitro enzyme/receptor binding assays are not applicable to Propargyl-PEG8-amine as it is a chemical linker rather than a bioactive compound targeting biological receptors. Instead, the compound is characterized by its chemical reactivity and suitability for bioconjugation. Quality control assays include HPLC analysis to determine purity, NMR spectroscopy to confirm structure, and functional assays to verify the reactivity of the alkyne and amine groups. The compound's solubility and stability in various solvents are also assessed to ensure compatibility with bioconjugation applications.
Cell Assay
In vitro cellular assays are not typically performed with Propargyl-PEG8-amine alone, as it is used as a chemical reagent rather than a bioactive compound. However, when incorporated into antibody-drug conjugates or other targeted therapeutics, the resulting conjugates are evaluated in cell-based assays to assess target binding, internalization, and cytotoxicity. The PEG linker's contribution to conjugate properties is assessed by comparing conjugates with different linkers in terms of stability, solubility, and biological activity. Cell viability, proliferation, and receptor binding assays are used to characterize the final conjugate.
Animal Protocol
In vivo animal experiments are not typically conducted with Propargyl-PEG8-amine alone. Instead, the compound is incorporated into antibody-drug conjugates or other drug delivery systems, and the resulting conjugates are evaluated in animal models. Pharmacokinetic studies assess the circulation half-life, tissue distribution, and clearance of the conjugate. Efficacy studies in tumor xenograft models evaluate the therapeutic activity of ADC conjugates containing Propargyl-PEG8-amine linkers. The PEG linker's contribution to in vivo performance is assessed by comparing conjugates with different linker compositions.
ADME/Pharmacokinetics
Propargyl-PEG8-amine is a chemical linker rather than a drug substance, so traditional pharmacokinetic studies are not applicable. However, when incorporated into drug conjugates, the PEG linker influences the pharmacokinetics of the conjugate by providing hydrophilicity, reducing aggregation, and extending circulation half-life. The PEG8 spacer minimizes renal clearance and opsonization, resulting in prolonged exposure and improved delivery to target tissues. The linker's stability in biological fluids is an important factor in determining the overall pharmacokinetic profile of the conjugate.
Toxicity/Toxicokinetics
Toxicity studies are not typically conducted with Propargyl-PEG8-amine alone, as it is used as a linker component rather than a therapeutic agent. However, the safety of PEG-based linkers is well-established, as PEG is generally recognized as safe and is widely used in pharmaceutical formulations. When incorporated into antibody-drug conjugates, the safety profile is determined by the entire conjugate, including the antibody, payload, and linker. Preclinical toxicology studies of ADC conjugates assess the safety of the complete molecule.
References

[1]. Preparation and Evaluation of Radiolabeled Antibody Recruiting Small Molecules That TargetProstate-Specific Membrane Antigen for Combined Radiotherapy and Immunotherapy. J Med Chem. 2016 Mar 24;59(6):2660-73.

Additional Infomation
Propargyl-PEG8-amine is a heterobifunctional PEG linker used for click chemistry and bioconjugation applications. It contains an alkyne group for CuAAC reactions with azide-containing compounds and an amine group for conjugation to carboxylates, NHS esters, and carbonyls. The compound is used as a non-cleavable ADC linker in antibody-drug conjugate synthesis and as a PROTAC linker for the synthesis of PROTAC molecules. It is intended for research use only and is not approved for human therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H37NO8
Molecular Weight
407.498986959457
Exact Mass
407.251
CAS #
1196732-52-1
Related CAS #
1196732-52-1;
PubChem CID
58078852
Appearance
Colorless to light yellow liquid(Density:1.070±0.06 g/cm3)
Density
1.1±0.1 g/cm3
Boiling Point
477.4±40.0 °C at 760 mmHg
Flash Point
232.8±21.0 °C
Vapour Pressure
0.0±1.2 mmHg at 25°C
Index of Refraction
1.466
LogP
-2.61
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
24
Heavy Atom Count
28
Complexity
337
Defined Atom Stereocenter Count
0
SMILES
O(CCOCCOCCOCCN)CCOCCOCCOCCOCC#C
InChi Key
HJYYOUVXTIUMEJ-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H37NO8/c1-2-4-21-6-8-23-10-12-25-14-16-27-18-19-28-17-15-26-13-11-24-9-7-22-5-3-20/h1H,3-20H2
Chemical Name
2-[2-[2-[2-[2-[2-[2-(2-prop-2-ynoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethanamine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4540 mL 12.2699 mL 24.5399 mL
5 mM 0.4908 mL 2.4540 mL 4.9080 mL
10 mM 0.2454 mL 1.2270 mL 2.4540 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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