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(1S,3R)-3-Aminocyclopentanecarboxylic acid

Cat No.:V92709 Purity: ≥98%
(1S,3R)-3-Aminocyclopentanecarboxylic acid
(1S,3R)-3-Aminocyclopentanecarboxylic acid Chemical Structure CAS No.: 71830-07-4
Product category: Others 15
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
Other Sizes
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Product Description
(1S,3R)-3-Aminocyclopentanecarboxylic acid (CAS#: 71830-07-4) is a chiral cyclic amino acid with the molecular formula C₆H₁₁NO₂. It features an amino group at the 3-position and a carboxylic acid at the 1-position of the cyclopentane ring, with defined (1S,3R) stereochemistry. This compound is a valuable building block for synthesizing chiral pharmaceuticals and peptidomimetics with constrained ring structures.
Biological Activity I Assay Protocols (From Reference)
Targets
Cyclic amino acid derivatives are known to interact with various biological targets including enzymes, receptors, and transporters. The chiral (1S,3R) configuration provides specific three-dimensional interactions with target proteins. The rigid cyclopentane ring provides conformational restriction that can enhance target selectivity and binding affinity.
ln Vitro
In vitro studies have demonstrated that cyclic amino acid derivatives exhibit significant biological activities including neurological, anti-inflammatory, and metabolic effects. The (1S,3R) stereochemistry may provide enhanced target selectivity and potency. Derivatives of this compound have been evaluated for various therapeutic applications.
ln Vivo
In vivo activity data are limited as this compound is primarily a synthetic intermediate. However, cyclic amino acid-based drugs have been developed for various therapeutic indications. The rigid ring structure may improve metabolic stability and pharmacokinetic properties. The compound's role is to enable the synthesis of diverse chiral derivatives for biological evaluation.
Enzyme Assay
For enzyme inhibition assays, the compound is dissolved in DMSO or aqueous buffer and diluted in assay buffer. The target enzyme is incubated with varying concentrations (0.1-100 µM) at 25-37°C for 30-60 minutes. Enzyme activity is measured using appropriate detection methods. IC₅₀ values are calculated from dose-response curves using nonlinear regression analysis.
Cell Assay
For cell-based studies, relevant cell lines are cultured in DMEM or RPMI-1640 with 10% FBS at 37°C in 5% CO₂. Cells are seeded in 96-well plates and treated with synthesized derivatives at 0.1-100 µM for 24-72 hours. Cell viability is assessed using MTT or CellTiter-Glo assays. Target engagement is confirmed by appropriate biochemical assays.
Animal Protocol
For in vivo studies, derivatives are formulated in suitable vehicles and administered orally or intraperitoneally to rodents at 10-100 mg/kg. Efficacy is evaluated in disease models. Blood samples are collected for pharmacokinetic analysis. Tissues are harvested for histopathological and biomarker analysis at study termination.
ADME/Pharmacokinetics
(1S,3R)-3-Aminocyclopentanecarboxylic acid has a molecular weight of approximately 129.16 g/mol. The compound is typically stored as a solid at room temperature. It is soluble in water and polar organic solvents. The amino and carboxylic acid groups provide handles for further derivatization. Metabolism may occur via oxidation and conjugation.
Toxicity/Toxicokinetics
Acute toxicity data are limited. Based on its structural class, cyclic amino acid derivatives may cause skin, eye, and respiratory irritation. Standard laboratory safety practices should be followed. The compound should be stored in a cool, dry place away from light and moisture. Long-term toxicity and carcinogenicity studies have not been reported.
Additional Infomation
Structures are described in the first source; selective GABA-A agonists; cyclopentane analogs of GABA; RN values of the (trans) isomers are described in the references.
This compound is a chiral building block for synthesizing pharmaceuticals and peptidomimetics. The (1S,3R) stereochemistry provides specific three-dimensional properties for target engagement. The rigid cyclopentane ring provides conformational restriction. It is a research chemical and is not an FDA-approved drug.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H11NO2
Molecular Weight
129.15704
Exact Mass
129.079
CAS #
71830-07-4
PubChem CID
1502034
Appearance
Off-white to light brown solid powder
Density
1.2±0.1 g/cm3
Boiling Point
264.7±33.0 °C at 760 mmHg
Melting Point
192ºC
Flash Point
113.9±25.4 °C
Vapour Pressure
0.0±1.1 mmHg at 25°C
Index of Refraction
1.515
LogP
-0.48
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
1
Heavy Atom Count
9
Complexity
124
Defined Atom Stereocenter Count
2
SMILES
C1C[C@H](C[C@H]1C(=O)O)N
InChi Key
MLLSSTJTARJLHK-CRCLSJGQSA-N
InChi Code
InChI=1S/C6H11NO2/c7-5-2-1-4(3-5)6(8)9/h4-5H,1-3,7H2,(H,8,9)/t4-,5+/m0/s1
Chemical Name
cis-(1S,3R)-3-aminocyclopentane-1-carboxylic acid
HS Tariff Code
2934.99.9144
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.7423 mL 38.7117 mL 77.4234 mL
5 mM 1.5485 mL 7.7423 mL 15.4847 mL
10 mM 0.7742 mL 3.8712 mL 7.7423 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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