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2,3,3-trimethyl-3H-Indole-5-sulfonic acid potassium salt (1:1)

Cat No.:V91239 Purity: ≥98%
2,3,3-Trimethylindolenine-5-sulfonic acid potassium is a water-soluble fluorescent near-infrared dye that can be coupled to peptides, proteins, nucleic acids, RNA, DNA, carbohydrates, polymers, and small molecules via sulfonyl substituents.
2,3,3-trimethyl-3H-Indole-5-sulfonic acid potassium salt (1:1)
2,3,3-trimethyl-3H-Indole-5-sulfonic acid potassium salt (1:1) Chemical Structure CAS No.: 184351-56-2
Product category: Fluorescent Dye
This product is for research use only, not for human use. We do not sell to patients.
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500mg
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Product Description
2,3,3-Trimethylindolenine-5-sulfonic acid potassium is a water-soluble fluorescent near-infrared dye that can be coupled to peptides, proteins, nucleic acids, RNA, DNA, carbohydrates, polymers, and small molecules via sulfonyl substituents.
2,3,3-Trimethyl-3H-Indole-5-sulfonic acid potassium salt (CAS# 184351-56-2) is a water-soluble, fluorescent compound belonging to the indolenine family. It is a key synthetic intermediate used to produce far-red and near-infrared (NIR) fluorescent cyanine dyes. This compound is characterized by its water solubility, a property imparted by the sulfonic acid group. It is widely employed in biomedical research for creating fluorescent probes to label biomolecules, including peptides, proteins, nucleic acids (RNA, DNA), carbohydrates, polymers, and small molecules.
Biological Activity I Assay Protocols (From Reference)
Targets
The compound itself does not have a biological protein target. Its purpose is as a chemical building block. The sulfonic acid group acts as a reactive handle that can be converted to a sulfonyl chloride or other activated ester, allowing covalent conjugation to nucleophilic groups on target molecules. The final cyanine dyes synthesized from it target specific proteins or DNA in biological assays via the attached ligands. It is a versatile intermediate for bio-conjugation.
ln Vitro
In vitro, the compound exhibits no intrinsic bioactivity. Its utility is demonstrated in the synthesis of fluorescent tracers. When coupled to a targeting ligand (e.g., an antibody), the resulting conjugate retains the binding specificity of the ligand. The parent indolenine salt does not inhibit enzymes or activate receptors. The excitation and emission maxima of dyes derived from this intermediate typically fall within the far-red to near-infrared spectrum (650-900 nm), ideal for deep-tissue imaging.
ln Vivo
The compound is not an active pharmaceutical ingredient and has no direct in vivo activity. It is a research chemical used to manufacture dyes for in vivo imaging. The biological activity observed in vivo results from the final functionalized dye, which may accumulate in tumors or specific organs depending on its targeting moiety. The sulfonated indolenine salt itself is chemically reactive but is not administered to animals.
Enzyme Assay
Cell‑free experiments are centered on the chemical synthesis of dyes. A standard protocol involves the alkylation of this indolenine salt with an activated halide (e.g., iodoalkane) to extend the conjugation chain, creating a cyanine dye. The reaction progress is monitored by Thin Layer Chromatography (TLC) and High-Performance Liquid Chromatography (HPLC). The purified product is characterized by UV-Vis spectroscopy to confirm absorbance and fluorescence profiles.
Cell Assay
The compound is not used directly in live-cell or fixed-cell assays. Instead, the final synthesized fluorescent dyes are used for labeling. For example, a cell membrane-permeable NIR dye can be incubated with live cells (1-10 uM for 15-30 minutes). After washing, the cells are visualized under a fluorescent microscope equipped with far-red/ NIR filters. The labeling efficiency is compared to standard dyes like DAPI or Hoechst.
Animal Protocol
This chemical is not administered in animal studies. However, the NIR dyes derived from it are frequently used in vivo. In a mouse xenograft model, a targeted NIR dye (e.g., folate-conjugate) is injected intravenously at 5-10 nmol per mouse. At 4-24 hours post-injection, the mice are imaged using an in vivo imaging system (IVIS) with excitation in the NIR range to visualize tumor-specific accumulation. This protocol is used to validate the binding of the synthesized probe.
ADME/Pharmacokinetics
PK data is not available for the synthetic intermediate itself. The water-soluble nature of the sulfonated indolenine significantly reduces its lipophilicity (log P ~ -1) and prevents passive diffusion across cell membranes. This characteristic is intentionally incorporated to allow conjugation to water-soluble molecules. It is stored at 2-8degC protected from light. Its oral bioavailability is presumed to be low.
Toxicity/Toxicokinetics
There is no specific toxicological data for this synthetic building block. Based on its chemical structure (aromatic sulfonate), it is expected to have low acute toxicity but may cause irritation to skin, eyes, and the respiratory tract. It should be handled with standard laboratory chemical safety practices: use of personal protective equipment (gloves, lab coat, safety glasses) and adequate ventilation.
References

[1]. A covalent approach for site‐specific RNA Labeling in mammalian cells[J]. Angewandte Chemie, 2015, 127(15): 4680-4685.

Additional Infomation
This product is a high-purity research-grade chemical, not an approved drug. It has no clinical trial status. It is widely used as a fundamental building block in the synthesis of organic dyes, particularly for fluorescence imaging, flow cytometry, and DNA sequencing. The molecular formula is C11H12KNO3S, with a molecular weight of 277.38 g/mol. It is stored at room temperature or 2-8degC, protected from light.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H12KNO3S
Molecular Weight
278.39
Exact Mass
277.017
CAS #
184351-56-2
PubChem CID
23681862
Appearance
Solid powder
Melting Point
262-264°C
LogP
2.49
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
1
Heavy Atom Count
17
Complexity
425
Defined Atom Stereocenter Count
0
SMILES
[K+].S(C1C([H])=C([H])C2=C(C=1[H])C(C([H])([H])[H])(C([H])([H])[H])C(C([H])([H])[H])=N2)(=O)(=O)[O-]
InChi Key
ZWIOSPCYIJAHKM-UHFFFAOYSA-M
InChi Code
InChI=1S/C11H13NO3S.K/c1-7-11(2,3)9-6-8(16(13,14)15)4-5-10(9)12-7;/h4-6H,1-3H3,(H,13,14,15);/q;+1/p-1
Chemical Name
potassium;2,3,3-trimethylindole-5-sulfonate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.5921 mL 17.9604 mL 35.9208 mL
5 mM 0.7184 mL 3.5921 mL 7.1842 mL
10 mM 0.3592 mL 1.7960 mL 3.5921 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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