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3-Hydroxyisovalerylcarnitine

Cat No.:V91006 Purity: ≥98%
3-Hydroxyisovalerylcarnitine is a carnitine derivative.
3-Hydroxyisovalerylcarnitine
3-Hydroxyisovalerylcarnitine Chemical Structure CAS No.: 99159-87-2
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
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Product Description
3-Hydroxyisovalerylcarnitine is a carnitine derivative. 3-Hydroxyisovaleryl carnitine in plasma can be used as a new biomarker for biotin deficiency in humans, and its concentration increases with biotin deficiency. Biotin deficiency reduces the activity of biotin-dependent 3-methylcrotonyl-CoA carboxylase, blocks the process of converting 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, and impairs the leucine catabolism pathway, leading to an increase in plasma 3-Hydroxyisovalerylcarnitine concentration.
3-Hydroxyisovalerylcarnitine (CAS: 99159-87-2; C12H23NO5, MW 261.31) is a carnitine derivative and an endogenous metabolite. It is not a drug but a key diagnostic biomarker for several inborn errors of metabolism, specifically disorders of leucine catabolism. It is used as a clinical and research standard to detect 3-methylcrotonyl-CoA carboxylase (3-MCC) deficiency, biotinidase deficiency, and multiple carboxylase deficiency (MCD) in newborn screening programs.
Biological Activity I Assay Protocols (From Reference)
Targets
3-Hydroxyisovalerylcarnitine itself is not a signaling molecule that binds to a biological receptor. Its significance is as a diagnostic marker. It accumulates in the body when the enzymatic activity of biotin-dependent carboxylases (like 3-methylcrotonyl-CoA carboxylase) is impaired. This blocks the leucine catabolic pathway, leading to the buildup of this metabolite, which is then esterified to carnitine for excretion.
ln Vitro
In vitro, the primary use of 3-Hydroxyisovalerylcarnitine is as a chemical standard. It is spiked into control blood or plasma samples to calibrate mass spectrometers for newborn screening assays. There is no reported in vitro biological activity (e.g., enzyme inhibition or receptor activation). It is not used in cell culture to study a therapeutic effect.
ln Vivo
In vivo, 3-Hydroxyisovalerylcarnitine is an accumulating metabolite in patients with specific metabolic disorders. Its levels in blood are used to diagnose and monitor these conditions. In animal models, it is not administered for a therapeutic effect but rather is measured as a marker. When administered to animals, it would likely be rapidly excreted in urine and not produce a specific pharmacodynamic effect.
Enzyme Assay
The compound is not used in receptor binding assays. Its application is strictly analytical. The compound is validated as a calibrator in tandem mass spectrometry (MS/MS). A stock solution is prepared in methanol. It is then diluted with a blank matrix (e.g., bovine blood or plasma) to create a series of calibration standards (e.g., 0.5 to 100 uM). The standards are processed alongside patient samples for quantitative analysis.
Cell Assay
No cell-based assays are performed for this compound. For diagnostic validation, a known concentration of the compound is added to whole blood spotted on filter paper (dried blood spots, DBS). The metabolites are extracted with a methanol solution containing an internal standard (e.g., deuterated 3-Hydroxyisovalerylcarnitine). The extract is analyzed directly by FIA-MS/MS without cell culture.
Animal Protocol
No in vivo animal protocols exist for this compound. For the development of diagnostic assays, the compound may be used to spike blank animal blood (e.g., rat or bovine blood) to serve as quality control material. However, it is not administered to live animals for efficacy or toxicity testing. All in vivo relevance is from its measurement in patient samples.
ADME/Pharmacokinetics
The compound is not a drug and has no PK parameters for human use. It is a water-soluble, endogenous metabolite. Its half-life in circulation is short, as it is filtered by the kidneys and excreted in urine. For research, it is stored at -20degC, protected from light. Stock solutions are typically prepared in methanol or water. The compound is stable under these conditions.
Toxicity/Toxicokinetics
Specific toxicology data is not applicable as it is an endogenous metabolite. At the high levels seen in disease, it is not directly toxic but is a marker of toxicity from other pathways. It is also used as a reagent. Standard laboratory safety precautions should be followed. It may be a skin, eye, and respiratory tract irritant. Avoid inhalation, ingestion, and skin contact.
References

[1]. Quantitative measurement of plasma 3-hydroxyisovaleryl carnitine by LC-MS/MS as a novel biomarker of biotin status in humans. Anal Chem. 2010 May 15;82(10):4140-4.

Additional Infomation
3-Hydroxyisovalerylcarnitine is a diagnostic biomarker used in clinical chemistry for newborn screening and metabolic disease monitoring. Elevated levels are indicative of disorders in leucine catabolism or biotin metabolism. It is not a drug and has no therapeutic applications, being strictly an analytical reference standard.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H23NO5
Molecular Weight
261.31
Exact Mass
261.158
CAS #
99159-87-2
PubChem CID
131668011
Appearance
Solid powder
LogP
0.9
Hydrogen Bond Donor Count
1
Rotatable Bond Count
7
Heavy Atom Count
18
Complexity
301
Defined Atom Stereocenter Count
1
SMILES
CC(CO)CC(OC(C[N+](C)(C)C)CC(=O)[O-])=O
InChi Key
DHRNMNHPSWBJEN-UHFFFAOYSA-N
InChi Code
InChI=1S/C12H23NO5/c1-9(2)6-11(16)18-12(17,7-10(14)15)8-13(3,4)5/h9,17H,6-8H2,1-5H3
Chemical Name
3-hydroxy-3-(3-methylbutanoyloxy)-4-(trimethylazaniumyl)butanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.8269 mL 19.1344 mL 38.2687 mL
5 mM 0.7654 mL 3.8269 mL 7.6537 mL
10 mM 0.3827 mL 1.9134 mL 3.8269 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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