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(S)-p-SCN-Bn-DOTA

Cat No.:V89889 Purity: ≥98%
(S)-p-SCN-Bn-DOTA is a bifunctional chelator (BFC), a macrocyclic DOTA derivative used for tumor pre-targeting.
(S)-p-SCN-Bn-DOTA
(S)-p-SCN-Bn-DOTA Chemical Structure CAS No.: 1020407-41-3
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
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Product Description
(S)-p-SCN-Bn-DOTA is a bifunctional chelator (BFC), a macrocyclic DOTA derivative used for tumor pre-targeting. It can be used for the coupling of peptides and radionuclides.
(S)‑p‑SCN‑Bn‑DOTA (CAS 1020407‑41‑3) is a bifunctional chelator combining a macrocyclic DOTA cage for radiometal binding and an isothiocyanate (‑SCN) group for covalent conjugation to the primary amines of antibodies, peptides, or proteins. The (S) stereochemistry at the benzyl position ensures optimal conjugation geometry. It is widely used for generating site‑specifically labeled radioimmunoconjugates.
Biological Activity I Assay Protocols (From Reference)
Targets
(S)‑p‑SCN‑Bn‑DOTA does not target a biological receptor directly; rather, the DOTA cage chelates radiometals (e.g., ⁹⁰Y, ¹⁷⁷Lu, ⁶⁸Ga) with high thermodynamic stability, while the isothiocyanate group reacts with lysine ε‑amines on biomolecules to form stable thiourea linkages. This conjugation strategy maintains the biological activity of the antibody or peptide after labeling.
ln Vitro
In vitro, (S)‑p‑SCN‑Bn‑DOTA is used to label antibodies for radioimmunotherapy. The chelator (10 mM in DMSO) is added to antibody (5 mg/mL in 0.1 M NaHCO3, pH 9.0) at a 10:1 molar ratio and incubated at 25 degC for 2 h. The conjugate is purified by size‑exclusion chromatography, and the chelator‑to‑antibody ratio (1-4:1) is determined by MALDI‑TOF. The labeled antibody retains >80% immunoreactivity as measured by ELISA.
ln Vivo
The DOTA‑antibody conjugate is radiolabeled (e.g., with ¹⁷⁷LuCl3, 15 microL, 1 mCi) in 0.2 M NH4OAc (pH 5.5) at 40 degC for 30 min. The radiochemical purity (>95%) is confirmed by ITLC (0.1 M citrate, pH 5, as mobile phase). For in vivo studies, the radiolabeled conjugate (50-100 microL, 10-20 MBq) is injected intravenously into tumor‑bearing mice. Biodistribution is assessed by PET/CT imaging and ex vivo gamma counting. High tumor uptake (10‑20 %ID/g) with low bone uptake (indicating minimal transchelation) is observed.
Enzyme Assay
A chelation efficiency test: (S)‑p‑SCN‑Bn‑DOTA (10 microM) is incubated with a solution of ⁹⁰YCl3 (5 microM) in 0.1 M NH4OAc (pH 6.0) at 37 degC for 1 h. The reaction mixture is analyzed by HPLC with a radiometric detector. The percentage of ⁹⁰Y bound to the chelator is calculated from the area of the ⁹⁰Y‑DOTA peak relative to free ⁹⁰Y. Complexation efficiency typically exceeds 98% under optimized conditions.
Cell Assay
No direct cell‑based assays are performed with the chelator alone. The ¹⁷⁷Lu‑labeled antibody‑DOTA conjugate is incubated with target‑positive cancer cells (e.g., HER2‑positive SK‑BR‑3, 1×10⁶ cells) at 37 degC for 4 h. Cell‑associated radioactivity is measured in a gamma counter. Specific binding is confirmed by blocking with a 100‑fold excess of unlabeled antibody. Internalization rates are measured by acid stripping (0.2 M glycine, 0.15 M NaCl, pH 2.8).
Animal Protocol
In a mouse xenograft model, ¹⁷⁷Lu‑labeled DOTA‑trastuzumab (150 microCi, 10 microg) is injected intravenously via tail vein. Serial SPECT/CT images are acquired at 1, 24, 48, and 96 h. At the final time point, organs are harvested and counted in a gamma counter. Tumor uptake peaks at 48 h (15‑25 %ID/g) and is stable out to 96 h. The radiolabeled conjugate shows high stability with negligible bone uptake (<1 %ID/g).
ADME/Pharmacokinetics
DOTA conjugates are stable in vivo and exhibit a biphasic plasma clearance: a rapid alpha‑phase (t1/2alpha ≈ 1 h) and a slow beta‑phase (t1/2beta ≈ 50-100 h) for antibodies due to their large size. The radiolabeled antibody‑DOTA conjugate is cleared via the reticuloendothelial system and hepatobiliary pathway, with urinary excretion of small fragments. The chelator itself has no inherent PK properties.
Toxicity/Toxicokinetics
(S)‑p‑SCN‑Bn‑DOTA is a laboratory reagent, not a drug. Toxicology studies on the chelator alone are not available. However, the DOTA ligand itself has low intrinsic toxicity (LD₅0 > 1000 mg/kg in mice). The primary safety concern is the potential for metal transchelation, which is minimal due to the high stability of DOTA metal complexes. As an isothiocyanate, (S)‑p‑SCN‑Bn‑DOTA is a potential respiratory irritant and should be handled in a fume hood with PPE.
Additional Infomation
(S)‑p‑SCN‑Bn‑DOTA is not an approved drug. It is a research‑only bifunctional chelator used to generate site‑specifically labeled DOTA‑conjugates for PET imaging (⁶⁸Ga, ⁶⁴Cu) and radioimmunotherapy (⁹⁰Y, ¹⁷⁷Lu). It is widely employed in preclinical cancer research, particularly for radiolabeling monoclonal antibodies and peptides. The stereospecific (S) configuration enhances conjugation efficiency and chelator stability compared to the racemic mixture.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C24H33N5O8S
Molecular Weight
551.61
Exact Mass
551.205
CAS #
1020407-41-3
PubChem CID
76968225
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
14
Rotatable Bond Count
11
Heavy Atom Count
38
Complexity
863
Defined Atom Stereocenter Count
1
SMILES
C1CN(CCN([C@H](CN(CCN1CC(=O)O)CC(=O)O)CC2=CC=C(C=C2)N=C=S)CC(=O)O)CC(=O)O
InChi Key
UDOPJKHABYSVIX-FQEVSTJZSA-N
InChi Code
InChI=1S/C24H33N5O8S/c30-21(31)13-26-5-6-27(14-22(32)33)9-10-29(16-24(36)37)20(12-28(8-7-26)15-23(34)35)11-18-1-3-19(4-2-18)25-17-38/h1-4,20H,5-16H2,(H,30,31)(H,32,33)(H,34,35)(H,36,37)/t20-/m0/s1
Chemical Name
2-[(6S)-4,7,10-tris(carboxymethyl)-6-[(4-isothiocyanatophenyl)methyl]-1,4,7,10-tetrazacyclododec-1-yl]acetic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.8129 mL 9.0644 mL 18.1288 mL
5 mM 0.3626 mL 1.8129 mL 3.6258 mL
10 mM 0.1813 mL 0.9064 mL 1.8129 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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