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Drisapersen sodium

Alias: Kyndrisa sodium; GSK2402968A sodium; PRO051 sodium
Cat No.:V89823 Purity: ≥98%
Drisapersen sodium is an antisense oligonucleotide that induces exon 51 skipping during dystrophin pre-mRNA splicing to synthesize partially functional dystrophin for Duchenne muscular dystrophy research.
Drisapersen sodium
Drisapersen sodium Chemical Structure CAS No.: 1181666-20-5
Product category: Others 15
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
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Product Description
Drisapersen sodium is an antisense oligonucleotide that induces exon 51 skipping during dystrophin pre-mRNA splicing to synthesize partially functional dystrophin for Duchenne muscular dystrophy research.
Drisapersen sodium is an antisense oligonucleotide (ASO) composed of 25 nucleotides with 2′‑O‑methyl-modified ribose sugars and a full phosphorothioate backbone. Its chemical formula is C211H2₅₆N₇₆Na1₉O11₉P1₉S1₉. It binds to exon 51 of the dystrophin pre-mRNA, inducing skipping of this mutated exon and restoring the reading frame. This allows production of a shorter but partially functional dystrophin protein.
Biological Activity I Assay Protocols (From Reference)
Targets
Drisapersen sodium targets dystrophin pre-mRNA at exon 51. By hybridizing to this region, it masks splice donor and acceptor sites, causing the spliceosome to bypass exon 51 during mRNA processing. This exon-skipping strategy is applicable to approximately 13% of Duchenne muscular dystrophy (DMD) patients who have amenable deletions in the dystrophin gene. The skipping event restores the translational reading frame.
ln Vitro
In vitro, Drisapersen sodium is tested in patient-derived myoblast cell cultures carrying DMD gene deletions that disrupt the reading frame but are amenable to exon 51 skipping. Treatment with 10-20 uM Drisapersen for 48-72 h induces exon 51 skipping, as detected by RT-PCR and sequencing. Restored dystrophin protein expression is confirmed by Western blotting or immunofluorescence, typically achieving 10-30% of normal control levels depending on the specific mutation and treatment conditions.
ln Vivo
In vivo studies were conducted in the mdx mouse model, which carries a nonsense mutation in exon 23 that is not amenable to exon 51 skipping. Therefore, efficacy was evaluated using humanized mouse models or non-human primates. A Phase 2 clinical trial in DMD patients showed that once‑weekly subcutaneous injection of Drisapersen (6 mg/kg) restored dystrophin expression in approximately 50% of treated patients as measured by muscle biopsy immunostaining after 12 weeks, with some patients achieving up to 15-20% of normal dystrophin levels.
Enzyme Assay
The ability of Drisapersen to induce exon 51 skipping is assessed in a cell‑free splicing assay using nuclear extracts from HeLa cells together with a minigene construct containing human dystrophin exons 51-52 flanked by introns. The ASO (0.1-10 uM) is added, and RNA is isolated after a 2 h incubation. RT-PCR is performed using primers spanning the exon 51-52 junction. Skipping efficiency is calculated by densitometry of the shorter PCR product representing exon 51 deletion.
Cell Assay
Primary human myoblasts from DMD patients with amenable deletions are differentiated into myotubes in 12‑well plates. Drisapersen is transfected using cationic lipids at concentrations of 5-25 uM. After 48 h, cells are harvested for RNA isolation and dystrophin mRNA analysis by nested RT-PCR. Dystrophin protein is detected by immunofluorescence using a C‑terminal antibody that recognizes the restored reading frame product. The percentage of dystrophin-positive myotubes is quantified by microscopy.
Animal Protocol
The in vivo efficacy of Drisapersen was evaluated in a Phase 2 open‑label clinical trial (NCT01153932). DMD patients with amenable deletions received once‑weekly subcutaneous injections of 6 mg/kg Drisapersen for 12 weeks. Muscle biopsies were taken from the tibialis anterior before the first dose and at week 12. The primary endpoint was the change in dystrophin-positive fibers from baseline as measured by immunohistochemistry. Secondary endpoints included the 6‑minute walk test (6MWT) for functional assessment.
ADME/Pharmacokinetics
Drisapersen sodium is administered subcutaneously. Its pharmacokinetic profile in patients shows dose-proportional exposure across 1-12 mg/kg. The terminal half‑life is approximately 2-4 weeks due to high protein binding and tissue distribution. Cmax is reached at 2-4 h post-dose. The plasma area under the curve (AUC) increases linearly with dose. Urinary excretion accounts for less than 5% of the administered dose, as it is mainly taken up by tissues, including skeletal muscle, where it exerts its pharmacodynamic effect.
Toxicity/Toxicokinetics
In Phase 2 and Phase 3 clinical trials, Drisapersen was generally well-tolerated. The most common adverse events were injection site reactions, including erythema and pain, occurring in >90% of patients, as well as transient pyrexia, and subclinical proteinuria. More serious adverse events included thrombocytopenia (low platelet count) and renal toxicity. In 2015, the European Medicines Agency (EMA) issued a negative opinion on the marketing authorization application due to insufficient evidence of efficacy and safety concerns.
References

[1]. Pharmacokinetics and safety of single doses of drisapersen in non-ambulant subjects with Duchenne muscular dystrophy: results of a double-blind randomized clinical trial. Neuromuscul Disord. 2014;24(1):16-24.

[2]. Safety and efficacy of drisapersen for the treatment of Duchenne muscular dystrophy (DEMAND II): an exploratory, randomised, placebo-controlled phase 2 study. Lancet Neurol. 2014;13(10):987-996.

Additional Infomation
Drisapersen sodium was developed for Duchenne muscular dystrophy (DMD) amenable to exon 51 skipping. While it received orphan drug designation from both FDA and EMA, it failed to achieve regulatory approval. Following a phase 3 confirmatory trial (NCT02310906) that did not meet its primary endpoint, the sponsor discontinued development in 2016. However, the antisense oligonucleotide technology validated by Drisapersen paved the way for the FDA‑approved drug eteplirsen (Exondys 51), a phosphorodiamidate morpholino oligomer targeting the same exon. Drisapersen is now exclusively a research tool for studying exon‑skipping mechanisms in DMD.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C211H256N76NA19O119P19S19
Molecular Weight
7395.00
Exact Mass
7392.415
CAS #
1181666-20-5
PubChem CID
121494117
Appearance
Solid powder
Hydrogen Bond Donor Count
27
Hydrogen Bond Acceptor Count
172
Rotatable Bond Count
136
Heavy Atom Count
463
Complexity
19400
Defined Atom Stereocenter Count
80
SMILES
CO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=S)([O-])O[C@@H]3[C@H](O[C@H]([C@@H]3OC)N4C=CC(=NC4=O)N)COP(=S)([O-])O[C@@H]5[C@H](O[C@H]([C@@H]5OC)N6C=CC(=O)NC6=O)COP(=S)([O-])O[C@@H]7[C@H](O[C@H]([C@@H]7OC)N8C=CC(=O)NC8=O)COP(=S)([O-])O[C@@H]9[C@H](O[C@H]([C@@H]9OC)N1C=CC(=O)NC1=O)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C(N=CN=C21)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=CC(=NC1=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C1N=C(NC2=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C1N=C(NC2=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=CC(=O)NC1=O)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C(N=CN=C21)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C1N=C(NC2=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C(N=CN=C21)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C(N=CN=C21)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C1N=C(NC2=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C1N=C(NC2=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C(N=CN=C21)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=NC2=C(N=CN=C21)N)COP(=O)(O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=CC(=NC1=O)N)COP(=S)([O-])O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N1C=CC(=O)NC1=O)CO)[S-])O.[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+]
InChi Key
FZJHBHYSGPESDI-FWLJYILUSA-A
InChi Code
InChI=1S/C211H275N76O119P19S19.19Na/c1-329-136-116(295)77(369-178(136)271-33-24-99(289)252-206(271)304)40-349-407(310,426)389-118-79(371-180(138(118)331-3)268-30-21-96(212)249-203(268)301)42-351-409(312,428)392-121-81(373-183(141(121)334-6)273-35-26-101(291)254-208(273)306)44-352-410(313,429)393-122-82(374-184(142(122)335-7)274-36-27-102(292)255-209(274)307)45-353-411(314,430)394-123-83(375-185(143(123)336-8)275-37-28-103(293)256-210(275)308)46-355-415(318,434)396-125-85(377-187(145(125)338-10)277-65-238-105-156(215)226-59-232-162(105)277)48-358-413(316,432)391-120-80(372-182(140(120)333-5)270-32-23-98(214)251-205(270)303)43-354-417(320,436)402-131-94(386-193(151(131)344-16)283-71-244-111-168(283)258-198(221)263-173(111)296)57-366-424(327,443)405-132-91(383-194(152(132)345-17)284-72-245-112-169(284)259-199(222)264-174(112)297)54-363-414(317,433)395-124-84(376-186(144(124)337-9)276-38-29-104(294)257-211(276)309)47-356-416(319,435)397-126-89(381-188(146(126)339-11)278-66-239-106-157(216)227-60-233-163(106)278)52-361-422(325,441)403-133-92(384-195(153(133)346-18)285-73-246-113-170(285)260-200(223)265-175(113)298)55-364-420(323,439)400-130-88(380-192(150(130)343-15)282-70-243-110-161(220)231-64-237-167(110)282)51-360-419(322,438)399-128-90(382-190(148(128)341-13)280-68-241-108-159(218)229-62-235-165(108)280)53-362-423(326,442)404-134-95(387-196(154(134)347-19)286-74-247-114-171(286)261-201(224)266-176(114)299)58-367-425(328,444)406-135-93(385-197(155(135)348-20)287-75-248-115-172(287)262-202(225)267-177(115)300)56-365-421(324,440)401-129-87(379-191(149(129)342-14)281-69-242-109-160(219)230-63-236-166(109)281)50-359-418(321,437)398-127-86(378-189(147(127)340-12)279-67-240-107-158(217)228-61-234-164(107)279)49-357-412(315,431)390-119-78(370-181(139(119)332-4)269-31-22-97(213)250-204(269)302)41-350-408(311,427)388-117-76(39-288)368-179(137(117)330-2)272-34-25-100(290)253-207(272)305;;;;;;;;;;;;;;;;;;;/h21-38,59-95,116-155,178-197,288,295H,39-58H2,1-20H3,(H,310,426)(H,311,427)(H,312,428)(H,313,429)(H,314,430)(H,315,431)(H,316,432)(H,317,433)(H,318,434)(H,319,435)(H,320,436)(H,321,437)(H,322,438)(H,323,439)(H,324,440)(H,325,441)(H,326,442)(H,327,443)(H,328,444)(H2,212,249,301)(H2,213,250,302)(H2,214,251,303)(H2,215,226,232)(H2,216,227,233)(H2,217,228,234)(H2,218,229,235)(H2,219,230,236)(H2,220,231,237)(H,252,289,304)(H,253,290,305)(H,254,291,306)(H,255,292,307)(H,256,293,308)(H,257,294,309)(H3,221,258,263,296)(H3,222,259,264,297)(H3,223,260,265,298)(H3,224,261,266,299)(H3,225,262,267,300);;;;;;;;;;;;;;;;;;;/q;19*+1/p-19/t76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,116-,117-,118-,119-,120-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,178-,179-,180-,181-,182-,183-,184-,185-,186-,187-,188-,189-,190-,191-,192-,193-,194-,195-,196-,197-,407?,408?,409?,410?,411?,412?,413?,414?,415?,416?,417?,418?,419?,420?,421?,422?,423?,424?,425?;;;;;;;;;;;;;;;;;;;/m1.................../s1
Chemical Name
nonadecasodium;1-[(2R,3R,4R,5R)-5-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-2-[[[(2R,3R,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-2-[[[(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-2-(hydroxymethyl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-methoxyoxolan-3-yl]oxy-sulfidophosphoryl]oxymethyl]-5-(6-aminopurin-9-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(6-aminopurin-9-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-5-(4-amino-2-oxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-oxidophosphinothioyl]oxymethyl]-4-hydroxy-3-methoxyoxolan-2-yl]pyrimidine-2,4-dione
Synonyms
Kyndrisa sodium; GSK2402968A sodium; PRO051 sodium
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.1352 mL 0.6761 mL 1.3523 mL
5 mM 0.0270 mL 0.1352 mL 0.2705 mL
10 mM 0.0135 mL 0.0676 mL 0.1352 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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