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2,3,4,6-Tetra-O-benzyl-D-glucopyranose

Alias: 2,3,4,6-Tetrakis-O-(phenylmethyl)-D-glucopyranose
2,3,4,6-Tetra-O-benzyl-D-glucopyranose is a biochemical reagent that can be used as a biomaterial or organic compound related to life science research.
2,3,4,6-Tetra-O-benzyl-D-glucopyranose
2,3,4,6-Tetra-O-benzyl-D-glucopyranose Chemical Structure CAS No.: 4132-28-9
Product category: Carbohydrate Metabolism
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
2,3,4,6-Tetra-O-benzyl-D-glucopyranose is a biochemical reagent that can be used as a biomaterial or organic compound related to life science research.
2,3,4,6-Tetra-O-benzyl-D-glucopyranose (CAS# 4132-28-9) is a protected glucose derivative in which all four hydroxyl groups (at positions 2, 3, 4, and 6) are substituted with benzyl ether groups. The anomeric carbon at position 1 remains a free hemiacetal, which can be further functionalized or used as a glycosyl donor after activation. This compound is a key intermediate in the synthesis of various glycoconjugates, glycosides, and oligosaccharides, especially in the preparation of glucuronide metabolites of drugs and biologically active natural products.
Biological Activity I Assay Protocols (From Reference)
Targets
2,3,4,6-Tetra-O-benzyl-D-glucopyranose does not have a biological target; it is a chemical building block. Its "target" in synthetic chemistry is the activation of the anomeric position for glycosylation reactions. The benzyl protecting groups are stable under a wide range of reaction conditions but can be removed by hydrogenolysis (e.g., Pd/C, H2) to yield free glucose derivatives. The free hemiacetal at C1 can be converted into a glycosyl bromide, trichloroacetimidate, or other leaving group for stereoselective glycosidic bond formation.
ln Vitro
No direct biological activity of 2,3,4,6-Tetra-O-benzyl-D-glucopyranose has been reported because it is a synthetic intermediate. However, after deprotection, the resulting glucose derivatives (e.g., D-glucuronic acid conjugates) may have biological activities. For example, glucuronide metabolites of drugs are often inactive and excreted. The compound itself is used in vitro to demonstrate glycosylation reactions; its activity is measured by conversion yield in a chemical reaction, not by cell-based assays. It has no agonistic or antagonistic effects on enzymes or receptors.
ln Vivo
There is no in vivo activity for this compound as a drug, as it is not administered to animals for therapeutic purposes. However, it is used in the synthesis of drug candidates that are later tested in vivo. For instance, a glycosylated natural product analog synthesized using this benzyl-protected glucose may be evaluated in mouse xenograft models for anticancer activity. The protective groups are removed at the final step to yield the active compound. Thus, the role of this compound is strictly in the chemical synthesis phase, not in biological testing.
Enzyme Assay
The purity of 2,3,4,6-Tetra-O-benzyl-D-glucopyranose is determined by non-cellular analytical methods such as high-performance liquid chromatography (HPLC) on a normal-phase column with UV detection at 254 nm (benzyl groups absorb strongly). Thin-layer chromatography (TLC) using silica gel and a solvent system of ethyl acetate/hexane (e.g., 1:3) gives an Rf value typically around 0.3-0.5. The anomeric configuration (alpha/beta ratio) can be determined by ¹H NMR (the anomeric proton appears as a doublet at delta ~5.1 ppm for alpha-anomer and ~4.4 ppm for beta-anomer with coupling constants J1,2 of ~3.5 Hz and ~7.5 Hz, respectively). Mass spectrometry (ESI-MS) confirms the molecular ion [M+Na]+ at m/z 561.2.
Cell Assay
This compound is not used in cell-based assays because it is insoluble in aqueous media and the benzyl groups are not compatible with living cells (they could be metabolized to benzyl alcohol, which is toxic). However, after deprotection to free glucose, the product can be used in cell uptake or metabolic studies. For example, tritium-labeled glucose is used to measure glucose transport in cultured adipocytes or hepatocytes. Such assays are performed in Krebs-Ringer buffer, with cells incubated with labeled glucose for 5-30 minutes, then washed and lysed, and radioactivity counted. The benzylated compound is not part of this protocol.
Animal Protocol
In vivo animal experiments are not performed with this protected sugar because it is not bioavailable and may be toxic. Instead, the final deprotected glycoside product may be tested. For instance, a novel glucuronide prodrug synthesized from this intermediate is administered orally to rats. Blood samples are collected at various time points, and the concentration of the active drug and its glucuronide metabolite is measured by LC-MS/MS. The prodrug approach is designed to improve solubility or target delivery. The benzylated glucose intermediate is never directly administered.
ADME/Pharmacokinetics
This compound is a chemical intermediate and has no pharmacokinetic profile. However, if one were to consider its potential oral absorption, the high lipophilicity due to four benzyl groups (cLogP ~5-6) would suggest good membrane permeability, but the compound would likely be extensively metabolized by debenzylation in the liver (by cytochrome P450 enzymes) to generate benzyl alcohol (toxic) and free glucose. In practice, this compound is not suitable for in vivo use. The final deprotected glucuronide metabolites of drugs typically have short half-lives (2-6 h) and are excreted renally.
Toxicity/Toxicokinetics
The toxicity of 2,3,4,6-Tetra-O-benzyl-D-glucopyranose is not well documented, but as a benzyl ether, it may be irritating to skin and eyes. Benzyl alcohol, a potential metabolite, has known toxicity (LD50 rat oral ~1230 mg/kg) and can cause respiratory depression, metabolic acidosis, and vasodilation. Handle with care: use fume hood, gloves, and goggles. This compound is not classified as a dangerous substance under GHS for acute oral toxicity, but standard laboratory chemical precautions apply. No specific long-term toxicity studies have been performed because it is not intended for human exposure.
References

[1]. Biochemical reagents[M]//Methods of Enzymatic Analysis. Academic Press, 1965: 967-1037.

Additional Infomation
2,3,4,6-Tetra-O-benzyl-D-glucopyranose (CAS 4132-28-9) has molecular formula C34H3₆O₆ and molecular weight 540.65 g/mol. It is a white to off-white crystalline powder with melting point 80-84degC. It is soluble in dichloromethane, chloroform, ethyl acetate, and toluene, but insoluble in water. This compound is a key intermediate in carbohydrate chemistry, used in the synthesis of glycosphingolipids, heparan sulfate fragments, and natural product glycosides. It is not a drug and has no clinical trials or FDA approval. The product is for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C34H36O6
Molecular Weight
540.66
Exact Mass
540.251
CAS #
4132-28-9
PubChem CID
54149221
Appearance
Solid powder
Density
1.2±0.1 g/cm3
Boiling Point
672.4±55.0 °C at 760 mmHg
Melting Point
145-149ºC
Flash Point
360.4±31.5 °C
Vapour Pressure
0.0±2.2 mmHg at 25°C
Index of Refraction
1.619
LogP
9.05
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
13
Heavy Atom Count
40
Complexity
665
Defined Atom Stereocenter Count
5
SMILES
O1C([H])([C@@]([H])([C@]([H])([C@@]([H])([C@@]1([H])C([H])([H])OC([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])OC([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])OC([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])OC([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])O[H]
InChi Key
OGOMAWHSXRDAKZ-GYLADCCPSA-N
InChi Code
InChI=1S/C34H36O6/c35-34-33(39-24-29-19-11-4-12-20-29)32(38-23-28-17-9-3-10-18-28)31(37-22-27-15-7-2-8-16-27)30(40-34)25-36-21-26-13-5-1-6-14-26/h1-20,30-35H,21-25H2/t30-,31-,32+,33-,34+/m0/s1
Chemical Name
(2R,3S,4R,5S,6S)-3,4,5-tris(phenylmethoxy)-6-(phenylmethoxymethyl)oxan-2-ol
Synonyms
2,3,4,6-Tetrakis-O-(phenylmethyl)-D-glucopyranose
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.8496 mL 9.2480 mL 18.4959 mL
5 mM 0.3699 mL 1.8496 mL 3.6992 mL
10 mM 0.1850 mL 0.9248 mL 1.8496 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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