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Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate (BPA-3',5'-pCp)

Cat No.:V86179 Purity: ≥98%
Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate (BPA-3',5'-pCp)
Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate (BPA-3',5'-pCp) Chemical Structure CAS No.: 1340586-70-0
Product category: Others 14
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
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Product Description
Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate (BPA-3',5'-pCp) is a Biotin-PEG4-alkane modified nucleotide (GB2479833A; compound 6).
Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate (BPA-3',5'-pCp) is a biotin-PEG4-alkane modified nucleotide (GB2479833A; compound 6). It is a synthetic analog of cytidine bisphosphate featuring a biotin moiety linked via a PEG4-alkane spacer. This compound is primarily used as a labeling or affinity probe in nucleotide-based research applications, facilitating the detection or purification of biomolecules that interact with cytidine nucleotides through biotin-streptavidin affinity systems.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary molecular target of Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate is not a specific protein receptor but rather nucleotide-binding proteins or enzymes that recognize cytidine or cytidine bisphosphate moieties. The biotin tag allows the compound to bind with high affinity to streptavidin or avidin proteins, making it a versatile probe for studying nucleotide interactions. It may also interact with polymerases or other enzymes that utilize nucleotide substrates in biochemical assays.
ln Vitro
In vitro, Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate serves as a substrate or probe in various biochemical assays. The cytidine bisphosphate moiety can be recognized by enzymes such as nucleotide kinases or transferases, while the biotin tag enables capture or detection using streptavidin-conjugated reporters. The PEG4 linker provides flexibility and aqueous solubility, reducing steric hindrance during binding events. The compound can be used in pull-down assays, ELISA, or surface plasmon resonance (SPR) studies to investigate nucleotide-protein interactions.
ln Vivo
In vivo activity for Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate is not typically characterized, as this compound is primarily used as a research tool for in vitro biochemical and cell-based applications rather than as a therapeutic agent. Its nucleotide structure and biotin modification may limit cellular permeability and systemic bioavailability. Any in vivo applications would likely involve local administration or use in specialized delivery systems for tracing or labeling purposes.
Enzyme Assay
Non-cellular enzyme/receptor binding assays for Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate typically involve incubating the compound with purified nucleotide-binding proteins or enzymes in buffer systems. Binding interactions are detected using streptavidin-coated surfaces or beads to capture the biotinylated compound. For enzyme activity assays, the compound may be used as a substrate analog, and product formation is monitored by chromatographic or spectroscopic methods. The PEG4-alkane linker enhances solubility and reduces non-specific binding.
Cell Assay
In vitro cellular experiments using Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate generally involve its application as a labeling reagent. Cells are incubated with the compound, and incorporation into cellular nucleotide pools or binding to cellular proteins is assessed. The biotin tag allows for subsequent detection using fluorescently labeled streptavidin or enzyme-conjugated streptavidin (e.g., HRP-streptavidin). The compound may also be used in nucleotide uptake studies or as a probe for studying nucleotide metabolism.
Animal Protocol
In vivo animal experiments are not commonly performed with Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate due to its role as a research reagent rather than a therapeutic compound. If applied in animal models, it would likely be used as a tracing agent or for targeted delivery studies where the biotin moiety enables detection in tissue sections. The compound's stability in biological fluids and its distribution would need to be evaluated on a case-by-case basis.
ADME/Pharmacokinetics
The pharmacokinetic properties of Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate are not well characterized, as the compound is not intended for therapeutic use. It has a molecular weight of 933.85 and a molecular formula of C33H57N7O18P2S. The compound is typically stored as a white to off-white solid at -20°C under nitrogen. In solvent, it is stable at -80°C for 6 months or at -20°C for 1 month under nitrogen. The PEG4 moiety contributes to its aqueous solubility.
Toxicity/Toxicokinetics
Toxicity data for Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate are limited as it is a research reagent not intended for human use. Standard laboratory safety precautions should be followed when handling this compound. The compound contains a nucleotide analog and a biotin moiety, both of which are generally considered to have low toxicity in the context of in vitro applications. Researchers should consult the safety data sheet (SDS) for specific handling and disposal guidelines.
References

[1].Modified nucleotides. GB2479833A.

Additional Infomation
Biotin-PEG4-alkane-3',5'-cytidine-bisphosphate (BPA-3',5'-pCp) is a specialized research tool identified by the synonyms BPA-3',5'-pCp. Its purity is typically ≥97%. The compound is described in GB2479833A as compound 6. It belongs to the category of nucleosides and their analogs. All products are for research use only and cannot be used for any clinical purposes.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
CAS #
1340586-70-0
Appearance
Typically exists as solid at room temperature
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO :~100 mg/mL (~107.08 mM; with sonication)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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