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Entrectinib-d4 (NMS-E628-d4; RXDX-101-d4)

Cat No.:V83700 Purity: ≥98%
Entrectinib-d4 (NMS-E628-d4; RXDX-101-d4)
Entrectinib-d4 (NMS-E628-d4; RXDX-101-d4) Chemical Structure Product category: Isotope-Labeled Compounds
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
Official Supplier of:
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Product Description
Entrectinib-d4 is a deuterated isotope of Paquinimod. Entrectinib is an orally available, blood-brain-penetrating, centrally active inhibitor of TrkA/B/C, ROS1, and ALK with IC50 values of 1, 3, 5, 12, and 7 nM, respectively. Entrectinib induces apoptosis and cell cycle arrest in cancer cells, has antitumor activity, and can also reduce bleomycin-induced pulmonary fibrosis in mice.
Entrectinib-d4 (NMS-E628-d4; RXDX-101-d4) is the deuterated form of Entrectinib, an orally active, BBB-penetrating, centrally active inhibitor of TrkA/B/C, ROS1, and ALK with IC50 values of 1, 3, 5, 12, and 7 nM, respectively. Entrectinib induces apoptosis and cell cycle arrest in cancer cells, has antitumor activity, and can reduce bleomycin-induced pulmonary fibrosis in mice. The deuterated form is used as a stable isotope-labeled compound for research applications.
Biological Activity I Assay Protocols (From Reference)
Targets
Entrectinib-d4 targets TrkA/B/C (tropomyosin receptor kinases), ROS1, and ALK (anaplastic lymphoma kinase). The parent compound Entrectinib is an orally active, blood-brain-penetrating, centrally active inhibitor with IC50 values of 1 nM for TrkA, 3 nM for TrkB, 5 nM for TrkC, 12 nM for ROS1, and 7 nM for ALK. By inhibiting these kinases, Entrectinib blocks cancer cell proliferation and survival signaling pathways.
ln Vitro
In vitro studies demonstrate that Entrectinib-d4 is the deuterated form of Entrectinib, which is a potent inhibitor of TrkA/B/C, ROS1, and ALK with IC50 values of 1, 3, 5, 12, and 7 nM, respectively. Entrectinib induces apoptosis and cell cycle arrest in cancer cells. The compound has antitumor activity in various cancer cell lines. Detailed in vitro activity data for the deuterated form are expected to be similar to the parent compound.
ln Vivo
In vivo activity of Entrectinib-d4 is inferred from the parent compound Entrectinib, which has antitumor activity and can reduce bleomycin-induced pulmonary fibrosis in mice. Entrectinib is orally active and blood-brain-penetrating, making it suitable for central nervous system applications. The deuterated form is used for pharmacokinetic and metabolic studies. Detailed in vivo data for the deuterated form are not extensively documented.
Enzyme Assay
The in vitro enzyme/receptor binding assay for Entrectinib-d4 involves measuring its inhibitory activity against TrkA/B/C, ROS1, and ALK kinases. Kinase assays using purified recombinant kinases incubated with the compound at varying concentrations, along with ATP and peptide substrates, are performed. Kinase activity is measured by quantifying phosphorylation levels. IC50 values are determined from dose-response curves. Standard protocols include appropriate positive controls and vehicle controls.
Cell Assay
In vitro cell-based assays for Entrectinib-d4 are conducted using cancer cell lines expressing Trk, ROS1, or ALK fusions or mutations. Cells are treated with the compound at various concentrations, and cell viability is measured using MTT or CCK-8 assays. Apoptosis is assessed by measuring caspase activation or Annexin V staining. Cell cycle arrest is evaluated by flow cytometry. Standard protocols include appropriate positive controls and vehicle controls.
Animal Protocol
In vivo animal studies for Entrectinib-d4 would typically be conducted using xenograft mouse models of cancers harboring Trk, ROS1, or ALK alterations. Animals would be administered the compound orally, and tumor growth inhibition would be monitored. The compound's ability to reduce bleomycin-induced pulmonary fibrosis in mice has been demonstrated for the parent compound. Pharmacokinetic parameters would be determined from plasma samples.
ADME/Pharmacokinetics
Pharmacokinetic properties of Entrectinib-d4 are expected to be similar to the parent compound Entrectinib, which is orally active and blood-brain-penetrating. The deuterated form is used as a stable isotope-labeled compound for research applications, including pharmacokinetic and metabolic studies. Detailed pharmacokinetic parameters for the deuterated form are not extensively documented in the available literature. The compound is intended for research use only.
Toxicity/Toxicokinetics
Toxicity information for Entrectinib-d4 is expected to be similar to the parent compound Entrectinib. Standard safety precautions for handling research chemicals should be followed. The compound is designated for research use only and is not for human therapeutic applications. No detailed toxicity data are available from the search results.
References

[1].Entrectinib ameliorates bleomycin-induced pulmonary fibrosis in mice by inhibiting TGF-β1 signaling pathway. Int Immunopharmacol. 2022 Dec;113(Pt B):109427.

[2].Entrectinib, a Pan-TRK, ROS1, and ALK Inhibitor with Activity in Multiple Molecularly Defined Cancer Indications. Mol Cancer Ther. 2016 Apr;15(4):628-39.

[3].Entrectinib is a potent inhibitor of Trk-driven neuroblastomas in a xenograft mouse model. Cancer Lett. 2016 Mar 28;372(2):179-86.

Additional Infomation
Entrectinib-d4 (NMS-E628-d4; RXDX-101-d4) is the deuterated form of Entrectinib, an orally active, BBB-penetrating inhibitor of TrkA/B/C (IC50 1, 3, 5 nM), ROS1 (12 nM), and ALK (7 nM). Entrectinib induces apoptosis and cell cycle arrest and has antitumor activity. It is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C31H30D4F2N6O2
Molecular Weight
564.66
Appearance
Typically exists as solid at room temperature
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
Typically soluble in DMSO (e.g. 10 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7710 mL 8.8549 mL 17.7098 mL
5 mM 0.3542 mL 1.7710 mL 3.5420 mL
10 mM 0.1771 mL 0.8855 mL 1.7710 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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