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Desmorpholinyl Quizartinib-PEG2-COOH

Alias: Desmorpholinyl Quizartinib-PEG2-COOH; 2292116-14-2; 3-(2-(2-((2-(4-(3-(5-(tert-Butyl)isoxazol-3-yl)ureido)phenyl)benzo[d]imidazo[2,1-b]thiazol-7-yl)oxy)ethoxy)ethoxy)propanoic acid;
Cat No.:V83014 Purity: ≥98%
Desmorpholinyl Quizartinib-PEG2-COOH contains the target protein FLT-3 ligand and a PEG-based PROTAC (PROteolysis TArgeting Chimera) linker.
Desmorpholinyl Quizartinib-PEG2-COOH
Desmorpholinyl Quizartinib-PEG2-COOH Chemical Structure CAS No.: 2292116-14-2
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
Other Sizes
Official Supplier of:
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Product Description
Desmorpholinyl Quizartinib-PEG2-COOH contains the target protein FLT-3 ligand and a PEG-based PROTAC (PROteolysis TArgeting Chimera) linker. Desmorpholinyl Quizartinib-PEG2-COOH may be utilized in the synthesis/preparation of PROTAC FLT-3 degrader 1 . PROTAC FLT-3 degrader 1 is a PROTAC FLT-3 ITD degrader with IC50 of 0.6 nM.
Desmorpholinyl Quizartinib-PEG2-COOH is a derivative of the FLT3 inhibitor quizartinib lacking the morpholinyl group, conjugated to a PEG2 spacer and a terminal carboxylic acid, used as a warhead for PROTACs.
Biological Activity I Assay Protocols (From Reference)
Targets
FLT-3
FLT3 (Fms-like tyrosine kinase 3) as a kinase inhibitor warhead. The desmorpholinyl modification may alter selectivity and potency.
ln Vitro
The receptor tyrosine kinase FLT-3 is frequently mutated in acute myeloid leukemia; however, current small molecule inhibitors suffer from limited efficacy in the clinic. Conversion of a FLT-3 inhibitor (quizartinib) into a proteolysis targeting chimera (PROTAC) results in a compound that induces degradation of FLT-3 ITD mutant at low nanomolar concentrations. Furthermore, the PROTAC is capable of inhibiting cell growth more potently than the warhead alone while inhibiting fewer off-target kinases. This enhanced antiproliferative activity occurs, despite a slight reduction in the PROTAC's kinase inhibitory activity, via an increased level of apoptosis induction suggesting nonkinase roles for the FLT-3 ITD protein. Additionally, the PROTAC is capable of inducing FLT-3 ITD degradation in vivo. These results suggest that degradation of FLT-3 ITD may provide a useful method for therapeutic intervention.[1]
The desmorpholinyl quizartinib moiety retains FLT3 inhibitory activity, though the removal of morpholine may reduce potency compared to parent quizartinib (IC50 ~1-10 nM for wild-type FLT3). The PEG2-COOH group allows conjugation to E3 ligase ligands via amide bond formation. The compound is used to build PROTACs for FLT3 degradation in acute myeloid leukemia (AML).
ln Vivo
PROTACs incorporating this warhead have shown in vivo degradation of FLT3 in mouse xenograft models, leading to tumor growth inhibition. The PEG2 linker provides a short, flexible spacer. The desmorpholinyl modification may improve metabolic stability. The intermediate itself is not a degrader; it must be conjugated to an E3 ligand. Specific in vivo data for this intermediate alone are limited.
Enzyme Assay
FLT3 kinase inhibition is measured by an enzymatic assay. Recombinant FLT3 kinase (0.5-5 nM) is incubated with ATP (10 uM) and a peptide substrate, with varying concentrations of desmorpholinyl quizartinib-PEG2-COOH (0-1000 nM). Phosphorylation is detected by a luminescent kinase assay (e.g., ADP-Glo). IC50 is calculated. The PEG2-COOH group may slightly reduce potency (IC50 ~5-50 nM).
Cell Assay
Cells expressing FLT3-ITD mutations (e.g., MV4-11 human AML cells) are treated with the compound alone or as part of a PROTAC (1-1000 nM) for 24-72 hours. FLT3 phosphorylation and total FLT3 levels are measured by Western blot. Cell viability is assessed by MTT. The compound alone inhibits FLT3 but does not induce degradation; the PROTAC induces degradation.
Animal Protocol
In vivo efficacy of PROTACs derived from this warhead is evaluated in MV4-11 xenograft mice. The PROTAC (10-50 mg/kg, IV or IP) is administered. Tumor volume is measured. FLT3 degradation in tumor lysates is assessed by Western blot. The intermediate is not dosed alone. Pharmacokinetics of the PROTAC are characterized (t1/2, Cmax, AUC).
ADME/Pharmacokinetics
Molecular weight: approximately 600-700 g/mol. The PEG2 spacer (MW ~88) increases water solubility slightly. The carboxylic acid group enables conjugation to amine-containing E3 ligands. The compound is stable at -20degC. PK data for the intermediate alone are not available; it is used only as a building block.
Toxicity/Toxicokinetics
Quizartinib and its derivatives are generally well-tolerated at therapeutic doses but may cause QTc prolongation at high concentrations. The desmorpholinyl modification may reduce this risk. Acute toxicity studies are limited. Standard safety precautions for kinase inhibitors apply. The compound is for research use only, not for human therapy.
References

[1]. Enhancing Antiproliferative Activity and Selectivity of a FLT-3 Inhibitor by Proteolysis Targeting Chimera Conversion. J Am Chem Soc. 2018 Dec 5;140(48):16428-16432.

Additional Infomation
This compound is a research intermediate for FLT3-targeting PROTACs. Quizartinib is a potent FLT3 inhibitor approved in some regions for relapsed/refractory FLT3-ITD AML. The morpholino group is a common feature; desmorpholinyl analogs are used to explore structure-activity relationships. The PEG2-COOH warhead can be coupled to VHL or cereblon ligands to produce FLT3 degraders, which may overcome resistance mutations.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C30H33N5O7S
Molecular Weight
607.677325963974
Exact Mass
607.21
CAS #
2292116-14-2
PubChem CID
154729642
Appearance
Light yellow to yellow solid powder
LogP
5.2
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
10
Rotatable Bond Count
14
Heavy Atom Count
43
Complexity
918
Defined Atom Stereocenter Count
0
SMILES
CC(C)(C)C1=CC(=NO1)NC(=O)NC2=CC=C(C=C2)C3=CN4C5=C(C=C(C=C5)OCCOCCOCCC(=O)O)SC4=N3
InChi Key
BMRGZWDBDUKFLR-UHFFFAOYSA-N
InChi Code
InChI=1S/C30H33N5O7S/c1-30(2,3)25-17-26(34-42-25)33-28(38)31-20-6-4-19(5-7-20)22-18-35-23-9-8-21(16-24(23)43-29(35)32-22)41-15-14-40-13-12-39-11-10-27(36)37/h4-9,16-18H,10-15H2,1-3H3,(H,36,37)(H2,31,33,34,38)
Chemical Name
3-[2-[2-[2-[4-[(5-tert-butyl-1,2-oxazol-3-yl)carbamoylamino]phenyl]imidazo[2,1-b][1,3]benzothiazol-6-yl]oxyethoxy]ethoxy]propanoic acid
Synonyms
Desmorpholinyl Quizartinib-PEG2-COOH; 2292116-14-2; 3-(2-(2-((2-(4-(3-(5-(tert-Butyl)isoxazol-3-yl)ureido)phenyl)benzo[d]imidazo[2,1-b]thiazol-7-yl)oxy)ethoxy)ethoxy)propanoic acid;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.6456 mL 8.2280 mL 16.4560 mL
5 mM 0.3291 mL 1.6456 mL 3.2912 mL
10 mM 0.1646 mL 0.8228 mL 1.6456 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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