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Uracil-13C (uracil-13C)

Cat No.:V82327 Purity: ≥98%
Uracil-13C is 13C (carbon 13) labelled Uracil.
Uracil-13C (uracil-13C)
Uracil-13C (uracil-13C) Chemical Structure CAS No.: 35803-45-3
Product category: Others 13
This product is for research use only, not for human use. We do not sell to patients.
Size Price
100mg
Other Sizes

Other Forms of Uracil-13C (uracil-13C):

  • Uracil-13C2,15N2 (uracil 13C2,15N2)
  • Cyclopentenyl uracil
  • 5-Chlorouracil (Fluorouracil impurity)
  • Dihydrouracil-d4 (5,6-Dihydrouracil-d4)
  • Orotic acid potassium (6-Carboxyuracil potassium; Vitamin B13 potassium)
  • Uracil (Pirod; Pyrod)
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Top Publications Citing lnvivochem Products
Product Description
Uracil-13C is 13C (carbon 13) labelled Uracil. Uracil is a common natural pyrimidine analogue, one of the four bases in RNA nucleic acids.
Uracil-13C (CAS#: 35803-45-3) is a stable isotope-labeled compound where the carbon atom at position 2 of the uracil molecule is replaced with the carbon-13 (13C) isotope. It is a white to off-white crystalline powder with molecular formula 13CC3H4N2O2 and molecular weight 113.08, used primarily as a tracer in research.
Biological Activity I Assay Protocols (From Reference)
Targets
No specific pharmacological target; it is a stable isotope-labeled analog of uracil, a naturally occurring pyrimidine derivative and one of the four nucleobases in RNA. It is used as a tracer in metabolic studies rather than as a drug targeting a specific protein.
ln Vitro
As a 13C-labeled uracil, it exhibits the same biological properties as unlabeled uracil, serving as a substrate for enzymes involved in pyrimidine metabolism such as dihydropyrimidine dehydrogenase. It is incorporated into RNA and used as a tracer to study nucleic acid metabolism and turnover.
ln Vivo
No specific in vivo activity; incorporated into RNA and used as a tracer in metabolic studies. Stable heavy isotopes have been incorporated into drug molecules largely as tracers for quantitation during drug development, including studies on absorption, distribution, metabolism, and excretion.
Enzyme Assay
No specific enzyme binding protocols. It is used as an internal standard for the quantification of uracil and its metabolites in biological samples by liquid chromatography-mass spectrometry (LC-MS/MS) or gas chromatography-mass spectrometry (GC-MS). A standard sample containing Uracil-13C is spiked into the biological matrix, and the 13C signal is used to quantify unlabeled uracil.
Cell Assay
(1) Seed cells in culture medium. (2) Add Uracil-13C (1-100 uM) to the culture medium for 0-72 hours. (3) Harvest cells, extract RNA or metabolites, and analyze incorporation of 13C into nucleosides, nucleotides, and RNA by LC-MS/MS or GC-MS. (4) Calculate metabolic flux using isotopic enrichment data.
Animal Protocol
(1) Administer Uracil-13C (10-100 mg/kg) to mice via oral gavage or IP injection. (2) Formulation: dissolve in saline or 0.5% methylcellulose. (3) Collect blood and tissues (liver, kidney, tumor) at predetermined time points (0.5, 1, 2, 4, 8, 24 h). (4) Extract metabolites and analyze 13C enrichment by LC-MS/MS or GC-MS. (5) Calculate pharmacokinetic parameters of uracil metabolism.
ADME/Pharmacokinetics
Stable isotope tracers are formulated in saline for IV injection or in 0.5% methylcellulose for oral gavage. The 13C label does not alter the PK properties of uracil, which in mice has a half-life of approximately 30-60 minutes, Cmax ~ 50-100 uM (PO, 100 mg/kg), and rapid clearance via urine. Uracil is a normal endogenous metabolite, so background correction is needed.
Toxicity/Toxicokinetics
Uracil-13C is considered non-toxic because uracil is a naturally occurring biomolecule. Acute toxicity studies in rodents show LD50 > 2000 mg/kg (PO). The 13C label is a stable, non-radioactive isotope with no additional toxicity. In vitro, CCK-8 assays in primary hepatocytes show no cytotoxicity at concentrations up to 10 mM. The compound is for research use only, not for human therapeutic use.
References
[1]. Russak EM, et al. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019 Feb;53(2):211-216.
[2]. Pałasz A, et al. In search of uracil derivatives as bioactive agents. Uracils and fused uracils: Synthesis, biological activity and applications. Eur J Med Chem. 2015 Jun 5;97:582-611.
Additional Infomation
Uracil-(2-13C) is a pyrimidinone compound and a (13)C modified compound. Uracil C-13 is being investigated in the clinical trial NCT01677338 (a Phase II study evaluating the preliminary performance of the C13-URA breath test kit in patients with dyspepsia).
Uracil-13C is a stable heavy isotope of uracil, a naturally occurring pyrimidine derivative found in RNA. The 13C labeling at the C2 position makes it a valuable internal standard for quantifying uracil and its metabolites in drug development, especially in pharmacokinetic and metabolic flux studies. It is not a drug and has not been approved by the FDA or EMA; it is strictly for laboratory research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C313CH4N2O2
Molecular Weight
113.08
Exact Mass
113.031
CAS #
35803-45-3
Related CAS #
Uracil;66-22-8
PubChem CID
10171240
Appearance
Typically exists as solid at room temperature
Density
1.322g/cm3
Melting Point
>300ºC (dec.)(lit.)
Index of Refraction
1.502
LogP
-1.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
0
Heavy Atom Count
8
Complexity
161
Defined Atom Stereocenter Count
0
SMILES
C1=CN[13C](=O)NC1=O
InChi Key
ISAKRJDGNUQOIC-AZXPZELESA-N
InChi Code
InChI=1S/C4H4N2O2/c7-3-1-2-5-4(8)6-3/h1-2H,(H2,5,6,7,8)/i4+1
Chemical Name
(213C)1H-pyrimidine-2,4-dione
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 8.8433 mL 44.2165 mL 88.4330 mL
5 mM 1.7687 mL 8.8433 mL 17.6866 mL
10 mM 0.8843 mL 4.4216 mL 8.8433 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
Title:Phase 2 Study to Evaluate the Preliminary Performance of the C13-URA Breath Test Kit in Dyspeptic Subjects
Status:Completed
updateDate:2019-04-08
Ctid:NCT01677338

Link: https://clinicaltrials.gov/ct2/show/NCT01677338

Conditions:Dyspeptic Subjects
Interventions:99mTc sulfur colloid
Phase:Phase 2
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