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(S,R,S)-AHPC-Me-C6-NH2

Cat No.:V81924 Purity: ≥98%
(S,R,S)-AHPC-Me-C6-NH2 may be utilized in the preparation /synthesis of PROTAC.
(S,R,S)-AHPC-Me-C6-NH2
(S,R,S)-AHPC-Me-C6-NH2 Chemical Structure CAS No.: 2411422-49-4
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
(S,R,S)-AHPC-Me-C6-NH2 may be utilized in the preparation /synthesis of PROTAC. (S,R,S)-AHPC-Me-C6-NH2 (Compound SI-9) contains VHL ligand 2 .
(S,R,S)-AHPC-Me-C6-NH2 (CAS: 2411422-49-4) is a VHL-based E3 ligase ligand-linker conjugate for PROTAC (PROteolysis-TArgeting Chimera) synthesis. It contains a VHL ligand (Compound SI-9) and an amine (NH2) functional group attached to a C6 alkyl linker.
Biological Activity I Assay Protocols (From Reference)
Targets
The VHL (von Hippel-Lindau) E3 ubiquitin ligase complex. The compound binds to the VHL protein, recruiting the E3 ligase to ubiquitinate target proteins that are brought into proximity via a conjugated target-binding ligand.
ln Vitro
This linker-ligand conjugate has no intrinsic pharmacological activity; it is a synthetic building block. However, the VHL-binding moiety alone (without a target ligand) shows no degradation activity. It is used exclusively as a chemical tool.
ln Vivo
No in vivo activity is reported for the linker alone. In vivo activity would only be observed after conjugation to a target-protein ligand to form a complete PROTAC molecule, which can induce target degradation in animal models.
Enzyme Assay
A non-cell assay is performed to confirm VHL binding. The compound is incubated with purified VHL-Elongin B-Elongin C complex and a fluorescently labeled HIF-1alpha peptide. Binding affinity is measured by fluorescence polarization or TR-FRET, with IC50 typically in the low nanomolar range.
Cell Assay
The linker alone is not tested in cell assays; only the complete PROTAC is used. For validation, cells are treated with a PROTAC built from this linker (e.g., 0.1-10 uM, 4-24 h). Target protein degradation is assessed by Western blot. The linker itself should cause no degradation.
Animal Protocol
No animal studies are performed with the linker alone. Complete PROTAC molecules containing this linker are administered to mice (e.g., IV or IP, 1-50 mg/kg) to evaluate target degradation in vivo, pharmacokinetics, and efficacy in xenograft models.
ADME/Pharmacokinetics
The linker itself does not have a PK profile; the PK of a PROTAC incorporating it depends on the target-binding ligand and overall molecular weight. The C6 alkyl linker is designed to be metabolically stable and to provide appropriate spacing between the VHL ligand and the target binder.
Toxicity/Toxicokinetics
The linker alone is not intended for therapeutic use and shows no cytotoxicity at concentrations used for PROTAC synthesis (e.g., up to 10 uM in cell culture). The toxicity of any PROTAC containing this linker must be evaluated individually. Standard laboratory safety precautions apply.
References

[1]. Oseltamivir PROTAC compound, preparation method thereof and application thereof in anti-influenza virus drugs. Patent CN112592331A.

[2]. Systematic profiling of conditional degron tag technologies for target validation studies. Nat Commun. 2022 Sep 20;13(1):5495.

Additional Infomation
(S,R,S)-AHPC-Me-C6-NH2 is a research building block for the preparation of PROTAC degraders. The free NH2 group allows conjugation to target-binding ligands via amide bond formation. It is for research use only, not for diagnostic or therapeutic applications. Store at -20degC, away from moisture and light.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C30H45N5O4S
Molecular Weight
571.774406194687
Exact Mass
571.319
CAS #
2411422-49-4
PubChem CID
154584012
Appearance
Off-white to light yellow solid powder
LogP
3.3
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
13
Heavy Atom Count
40
Complexity
844
Defined Atom Stereocenter Count
4
SMILES
S1C=NC(C)=C1C1C=CC(=CC=1)[C@H](C)NC([C@@H]1C[C@H](CN1C([C@H](C(C)(C)C)NC(CCCCCCN)=O)=O)O)=O
InChi Key
UGZLQBJANUBKTH-BOALBMDWSA-N
InChi Code
InChI=1S/C30H45N5O4S/c1-19(21-11-13-22(14-12-21)26-20(2)32-18-40-26)33-28(38)24-16-23(36)17-35(24)29(39)27(30(3,4)5)34-25(37)10-8-6-7-9-15-31/h11-14,18-19,23-24,27,36H,6-10,15-17,31H2,1-5H3,(H,33,38)(H,34,37)/t19-,23+,24-,27+/m0/s1
Chemical Name
(2S,4R)-1-[(2S)-2-(7-aminoheptanoylamino)-3,3-dimethylbutanoyl]-4-hydroxy-N-[(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]pyrrolidine-2-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7490 mL 8.7448 mL 17.4895 mL
5 mM 0.3498 mL 1.7490 mL 3.4979 mL
10 mM 0.1749 mL 0.8745 mL 1.7490 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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