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5-Hydroxyindole-3-acetic acid-d6

Cat No.:V77319 Purity: ≥98%
5-Hydroxyindole-3-acetic acid-d6 is the deuterated form of 5-Hydroxyindole-3-acetic acid.
5-Hydroxyindole-3-acetic acid-d6
5-Hydroxyindole-3-acetic acid-d6 Chemical Structure Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of 5-Hydroxyindole-3-acetic acid-d6:

  • 5-Hydroxyindole-3-acetic acid-d5
  • 5-Hydroxyindole-3-acetic acid-d2
  • 5-Hydroxyindole-3-acetic acid-13C6
  • 5-Hydroxyindole-3-acetic acid
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Top Publications Citing lnvivochem Products
Product Description
5-Hydroxyindole-3-acetic acid-d6 is the deuterated form of 5-Hydroxyindole-3-acetic acid. 5-Hydroxyindole-3-acetic acid is the major metabolite of serotonin or metanephrine and is used as a biomarker for neuroendocrine tumors.
5-Hydroxyindole-3-acetic acid-d6 (5-HIAA-d6) is a stable isotope-labeled (deuterium, d6) form of 5-Hydroxyindole-3-acetic acid (5-HIAA). It contains six deuterium atoms and is intended for use as an internal standard for the quantification of 5-HIAA by GC- or LC-MS. It has a molecular formula of C10H3D6NO3 and a molecular weight of 197.22. This isotopically labeled compound is essential in clinical and research settings for monitoring serotonin metabolism and diagnosing neuroendocrine tumors.
Biological Activity I Assay Protocols (From Reference)
Targets
The unlabeled 5-HIAA is the major metabolite of serotonin (5-HT). Serotonin is a key neurotransmitter and hormone that acts on a family of 5-HT receptors (GPCRs and ion channels). 5-HIAA is formed from serotonin via a 5-Hydroxy Indole-3-acetaldehyde intermediate by the action of aldehyde dehydrogenase. It is inactive and is excreted in the urine. As a metabolite, it serves as a biomarker for serotonin production. The d6-labeled standard does not directly interact with enzymes or receptors.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as tracers for quantification throughout the drug development process. Due to its potential to alter the pharmacokinetic and metabolic characteristics of medications, deuteration has drawn attention[1].
As an internal standard, 5-Hydroxyindole-3-acetic acid-d6 has no biological activity. The non-labeled 5-HIAA is the major metabolite of serotonin and is used as a biomarker for serotonin turnover. In vitro, levels of 5-HIAA in cell culture media can be measured to assess the activity of the serotonin pathway, particularly in models of neuroendocrine tumors.
ln Vivo
In vivo, the unlabeled 5-HIAA is a major metabolite of serotonin. Its concentration in urine (measured over 24 hours) is a well-established biomarker for the diagnosis and monitoring of carcinoid tumors and other neuroendocrine tumors that produce excess serotonin. Elevated levels indicate increased serotonin production. The deuterated compound serves as an internal standard for this diagnostic test.
Enzyme Assay
The labeled internal standard is not used in enzyme/receptor binding assays. It is used in analytical method development for LC-MS/MS. A standard protocol involves spiking a known amount of the d6-labeled internal standard into biological samples (e.g., urine, plasma, tissue homogenate). After sample preparation (protein precipitation, dilution, or solid-phase extraction), the sample is analyzed by LC-MS/MS. The deuterated standard and the non-labeled analyte are detected in MRM mode, and the peak area ratio is used for precise quantification.
Cell Assay
For in vitro cellular metabolism studies, cultured cells (e.g., neuroendocrine cell lines like BON-1) are treated with compounds that affect serotonin synthesis or release. The culture media is collected, and the d6-labeled internal standard is spiked in. After protein precipitation and centrifugation, the supernatant is analyzed by LC-MS/MS. The concentration of 5-HIAA in the media is used as an indirect measure of serotonin release and metabolism.
Animal Protocol
The internal standard is not administered directly. In animal studies (e.g., mice with xenografted tumors), urine or plasma is collected. The d6-labeled internal standard is spiked into the samples before LC-MS/MS analysis. This allows for the accurate measurement of the endogenous biomarker 5-HIAA, which can be used to monitor tumor burden or the pharmacodynamic effect of drugs targeting serotonin synthesis (e.g., tryptophan hydroxylase inhibitors).
ADME/Pharmacokinetics
5-Hydroxyindole-3-acetic acid-d6 has a molecular formula of C10H3D6NO3 and a molecular weight of 197.22. It is soluble in DMSO, methanol, and ethyl acetate. For LC-MS/MS applications, it is typically dissolved in a suitable solvent such as water or methanol to prepare stock solutions. The deuterated compound is stable and co-elutes with the non-labeled analyte during chromatography. Long-term storage should be at -20degC, protected from light and moisture.
Toxicity/Toxicokinetics
The deuterated compound is non-toxic at the trace concentrations used for analytical purposes. The unlabeled parent, 5-HIAA, is an endogenous metabolite and is non-toxic at physiological levels. The compound is "For research use only" and not for human therapeutic or diagnostic use.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019;53(2):211-216.

[2]. Urinary sampling for 5HIAA and metanephrines determination: revisiting the recommendations. Endocr Connect. 2017 Aug;6(6):R87-R98.

Additional Infomation
5-Hydroxyindole-3-acetic acid-d6 is a research-grade stable isotope-labeled chemical used as an internal standard for LC-MS/MS quantification. The unlabeled 5-HIAA is the major metabolite of serotonin and is used as a biomarker for neuroendocrine tumors. This product is for research use only (RUO) and is not a clinical drug; it has no FDA approval for human therapy. It is used in clinical chemistry and pharmacology for the validation of assays measuring serotonin turnover.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H3D6NO3
Molecular Weight
197.22
Related CAS #
5-Hydroxyindole-3-acetic acid;54-16-0
Appearance
White to off-white solid powder
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.0705 mL 25.3524 mL 50.7048 mL
5 mM 1.0141 mL 5.0705 mL 10.1410 mL
10 mM 0.5070 mL 2.5352 mL 5.0705 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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