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SF2312 ammonium

Alias: SF2312 ammonium; SF-2312 ammonium
Cat No.:V76519 Purity: ≥98%
SF2312 ammonium is the ammonium form of SF2312.
SF2312 ammonium
SF2312 ammonium Chemical Structure Product category: Bacterial
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Other Sizes

Other Forms of SF2312 ammonium:

  • SF-2312
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Top Publications Citing lnvivochem Products
Product Description
SF2312 ammonium is the ammonium form of SF2312. SF2312 is a phosphonate antibiotic and enolase inhibitor. SF2312 can be extracted from the actinomycete Micromonospora and is active under anaerobic conditions. SF2312 is selectively toxic to ENO1-deficient glioma cells.
Biological Activity I Assay Protocols (From Reference)
Targets
SF2312 ammonium is a highly potent inhibitor of Enolase (ENO2 and ENO1). The enzymatic inhibition IC₅₀ for SF-2312 against human Enolase 2 (ENO2) is in the low nM range (approximately 10 nM). [1]
ln Vitro
SF2312 ammonium potently inhibits the enzymatic activity of Enolase in vitro, with an IC₅₀ in the low nM range. [1] SF-2312 selectively inhibits the proliferation of ENO1-deleted glioma cell lines (D423 and Gli56) in the low µM range, while isogenic ENO1-rescued cells only show inhibition at concentrations above 200 µM. [1] SF-2312 treatment (10 µM) for 72 hours leads to a profound inhibition of glycolysis in ENO1-deleted glioma cells, as evidenced by decreased conversion of ¹³C-glucose to ¹³C-lactate and increased conversion to ¹³C-glycerate. [1] SF-2312 treatment results in a significant increase in the 3-PGA/PEP ratio in ENO1-deleted glioma cells, indicating specific inhibition of Enolase activity within cells. [1] SF-2312 induces apoptosis in ENO1-deleted D423 glioma cells starting at 12.5 µM, while ENO1-rescued controls only show cell death induction at 400 µM. [1] SF-2312 treatment decreases ATP levels and other high-energy phosphates (e.g., phosphocreatine) in ENO1-deleted glioma cells as early as 8 hours after treatment initiation. [1]
Enzyme Assay
Enolase enzymatic activity was measured using two methods: a fluorometric NADH-linked assay and a direct spectrophotometric assay via formation of phosphoenolpyruvate (PEP). For the fluorometric assay, enolase activity was measured via NADH oxidation in a pyruvate kinase-lactate dehydrogenase coupled assay. The assay was conducted in a buffer containing KCl, MgSO₄, triethanolamine, NADH, and ADP, with excess 2-phosphoglycerate (2-PGA), pyruvate kinase, and lactate dehydrogenase. Enolase activity was determined by measuring the oxidation of NADH fluorometrically with excitation at 340 nm and emission at 460 nm. The substrate concentration was 5 mM 2-PGA. Alternatively, enolase activity was measured directly by the appearance of PEP from 2-PGA via absorption at 240 nm, omitting auxiliary reagents. Both assays were conducted in a 96-well plate format. [1]
Cell Assay
Cell proliferation was assayed using crystal violet staining or by live-cell confluence measurements with an automated imaging system. For crystal violet assays, cells were seeded in 96-well plates, treated, fixed with formalin, stained with crystal violet, and the dye was extracted with acetic acid for absorbance measurement at 595 nm. [1] Apoptosis was assessed by staining cells with YO-PRO®-1 iodide. Apoptotic cells become permeable to the dye, while live cells are not stained. Total cell number was quantified using Hoechst 33342. Cells were seeded in 96-well plates, treated, stained, and imaged using a high-content screening system. [1] ATP content was measured using a luciferase/luciferin-based assay. The assay reagent was added to cells in 96-well plates, and luminescence was measured. [1] Glycolytic flux was measured using ¹³C isotope tracing. Cells were cultured in glucose-free DMEM supplemented with ¹³C-1 or uniformly labeled ¹³C-glucose. Media metabolites were extracted with methanol, lyophilized, resuspended in D₂O, and analyzed by ¹³C NMR spectroscopy. [1] Cellular thermal shift assays were performed to demonstrate direct binding of SF-2312 to Enolase in intact cells. Cells were treated with the drug, trypsinized, washed, resuspended in PBS, and subjected to a temperature gradient. Cells were then lysed, centrifuged, and the supernatant was analyzed by Western blot. [1]
Toxicity/Toxicokinetics
SF-2312 exhibits selective toxicity towards ENO1-deleted glioma cells compared to ENO1-rescued or ENO1-intact cells. In ENO1-deleted D423 cells, inhibition of proliferation and induction of apoptosis occur at low µM concentrations, while much higher concentrations (above 200 µM) are required in rescued cells. [1]
References

[1]. SF2312 is a natural phosphonate inhibitor of enolase. Nat Chem Biol. 2016 Dec;12(12):1053-1058.

Additional Infomation
SF2312 ammonium is a natural phosphonate antibiotic produced by the actinomycete Micromonospora, originally identified for its antibacterial activity under anaerobic conditions. Its mechanism of action was previously unknown. [1] SF-2312 is a racemic mixture of cis and trans diastereomers. The (S,S)-enantiomer is the active form that binds to Enolase, as determined by X-ray crystallography. [1] SF-2312 likely penetrates bacterial membranes through the Glucose-6-phosphate transporter system, similar to fosfomycin, which may explain its lack of activity against fungi. [1] The phosphonate moiety of SF-2312 confers poor cellular permeability, which is a limitation for its development as a therapeutic agent. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C4H11N2O6P
Molecular Weight
214.11
Exact Mass
231.0620221
Related CAS #
SF2312;107729-45-3
PubChem CID
170900975
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
0
Heavy Atom Count
14
Complexity
236
Defined Atom Stereocenter Count
0
SMILES
C1C(C(=O)N(C1O)O)P(=O)([O-])[O-].[NH4+].[NH4+]
InChi Key
HWIRXQWBKSFJJG-UHFFFAOYSA-N
InChi Code
InChI=1S/C4H8NO6P.2H3N/c6-3-1-2(12(9,10)11)4(7)5(3)8;;/h2-3,6,8H,1H2,(H2,9,10,11);2*1H3
Chemical Name
diazanium;1,5-dihydroxy-3-phosphonatopyrrolidin-2-one
Synonyms
SF2312 ammonium; SF-2312 ammonium
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O :≥ 30 mg/mL (~140.11 mM)
DMSO :< 1 mg/mL
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.6705 mL 23.3525 mL 46.7050 mL
5 mM 0.9341 mL 4.6705 mL 9.3410 mL
10 mM 0.4670 mL 2.3352 mL 4.6705 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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