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CL2A

Cat No.:V76146 Purity: ≥98%
CL2A is a cleavable PEG8- and trisazo-containing PBC-peptide-mc linker.
CL2A
CL2A Chemical Structure CAS No.: 2616704-22-2
Product category: ADC Linker
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
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Product Description
CL2A is a cleavable PEG8- and trisazo-containing PBC-peptide-mc linker. CL2A undergoes pH-sensitive degradation, produces a bystander effect, and binds to antibodies on cysteine residues via disulfide bonds. Labetuzumab goviteca bioactive molecule uses this linker.
CL2A (CAS#: 2616704-22-2) is a cleavable, complex ADC linker containing a PEG8 chain and a triazole ring. It is designed for site-specific conjugation to antibodies via a disulfide bond at a cysteine residue. CL2A is notable for its pH-sensitive cleavage mechanism, which allows for the release of a bystander effect-inducing payload. Its structure includes a PABC (p-aminobenzyl carbamate) spacer and a peptide component. The labetuzumab govitecan ADC utilizes this linker. This product is intended for research and development purposes only in the field of antibody-drug conjugates.
Biological Activity I Assay Protocols (From Reference)
Targets
Cleavable Linker
CL2A itself has no direct biological target. It serves as a linker in ADCs, providing the structural connection between an antibody and a cytotoxic agent. The drug linker conjugate targets cells expressing the antibody's specific antigen. The cleavable nature of CL2A is designed to exploit the acidic environment of the tumor microenvironment or the lysosomal compartment of target cells, leading to hydrolysis and subsequent release of the payload. The ultimate target of the delivered payload is the DNA topoisomerase I or the microtubule network, depending on the conjugated drug, inducing cell cycle arrest and apoptosis.
ln Vitro
There is no reported direct biological activity for CL2A alone. Its "in vitro activity" is evaluated as part of an ADC. The conjugation efficiency is measured using methods like LC-MS or hydrophobic interaction chromatography (HIC) to determine the drug-to-antibody ratio (DAR). In cell-based assays, the ADC's activity is characterized by its IC₅0 against target antigen-positive cell lines. The bystander effect is confirmed in co-culture assays where only a fraction of cells express the target antigen, yet the ADC shows activity against adjacent antigen-negative cells.
ln Vivo
No in vivo activity is reported for CL2A as a standalone compound. Its activity is assessed when conjugated to an antibody and payload in animal models of human cancer. In mouse xenograft models, an ADC using the CL2A linker has shown significant anti-tumor activity, leading to tumor regression and improved survival. The pH-sensitive cleavage mechanism is believed to contribute to its efficacy by promoting payload release in the acidic tumor microenvironment, which may also enhance the bystander effect. This has been demonstrated in xenograft models where heterogeneous antigen expression is common.
Enzyme Assay
A typical non-cellular assay for a pH-sensitive linker like CL2A involves a stability test under different pH conditions. The linker-payload conjugate is incubated in buffers of varying pH (e.g., pH 5.0, 6.0, and 7.4) at 37degC for 24 hours. The release of the payload is monitored by taking samples at various time points and analyzing them by HPLC or LC-MS/MS to calculate the percentage of payload released at each pH. This confirms the faster release under acidic conditions, mimicking the tumor microenvironment or lysosomes, compared to physiological pH (7.4).
Cell Assay
There is no standard in vitro cell-based assay for the linker alone. For an ADC containing CL2A, an internalization assay is performed using flow cytometry. Cells are incubated with the ADC at 4degC to allow binding, then shifted to 37degC to induce internalization. At different time points, cells are washed to remove surface-bound antibodies, and a secondary antibody is used to detect the remaining surface fraction. Confocal microscopy with lysosomal tracers is used to visualize the colocalization of the ADC in acidic lysosomal compartments, confirming the delivery of the linker-payload to the intended site of cleavage.
Animal Protocol
Animal studies for CL2A are not performed independently. For an ADC containing this linker, a typical in vivo protocol involves the use of female NSG or BALB/c nude mice bearing established tumor xenografts. Mice are randomized into groups and treated intravenously with the ADC at various doses once weekly for 2-4 weeks. Tumor volumes and body weights are measured biweekly. For a mechanistic study, mice are euthanized at different time points post-dose to collect tumors and blood. The tumor and plasma concentrations of total antibody, ADC, and released payload are quantified by ELISA or LC-MS/MS to confirm tumor-specific delivery and release.
ADME/Pharmacokinetics
The pharmacokinetic properties are not determined for CL2A itself but for the complete ADC. An ADC featuring the CL2A linker has a typical biphasic profile for the antibody component, with a slow terminal half-life. The linker-payload conjugate is stable in circulation, with minimal deconjugation observed over 7-21 days. The released payload is often rapidly cleared from the plasma, with a short half-life, ensuring minimal systemic exposure. The clearance mechanisms of the ADC involve proteolytic degradation, and the released small molecule is subject to hepatic metabolism and biliary/fecal excretion.
Toxicity/Toxicokinetics
No standalone toxicity data is available for CL2A. The toxicity of an ADC containing this linker in preclinical studies is attributed to the payload and often includes dose-limiting toxicities such as neutropenia and gastrointestinal effects. In animal models, the MTD is determined through dose-escalation studies. Toxicological monitoring includes CBC with differential, serum chemistry panels, and histopathological examination of major organs (liver, kidney, bone marrow, gastrointestinal tract) to identify target organs of toxicity and to establish a safety margin for the therapeutic dose.
References

[1]. Antibody drug conjugates (ADC). Teknisk- naturvetenskaplig fakultet.

Additional Infomation
CL2A is not a drug and is not approved for human use. It is a research-grade chemical linker specifically designed for the development of cleavable ADCs. Its key attribute is pH-sensitive cleavage, enabling the release of the payload and promoting a bystander effect, which is beneficial for treating tumors with heterogeneous target antigen expression. The labetuzumab govitecan ADC, which uses this linker, is a known construct. No clinical trials are registered for the linker itself. For research use only; not for human therapeutic administration.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C50H79N9O16
Molecular Weight
1062.21
Exact Mass
1061.564
CAS #
2616704-22-2
PubChem CID
154573757
Appearance
Colorless to light yellow viscous liquid
LogP
-3
Hydrogen Bond Donor Count
6
Hydrogen Bond Acceptor Count
19
Rotatable Bond Count
44
Heavy Atom Count
75
Complexity
1620
Defined Atom Stereocenter Count
1
SMILES
C1CC(CCC1CN2C(=O)C=CC2=O)C(=O)NCC3=CN(N=N3)CCOCCOCCOCCOCCOCCOCCOCCOCCNC(=O)COCC(=O)N[C@@H](CCCCN)C(=O)NC4=CC=C(C=C4)CO
InChi Key
CJDCJOXHKQMGGB-DBSIFAAZSA-N
InChi Code
InChI=1S/C50H79N9O16/c51-14-2-1-3-44(50(66)54-42-10-6-40(36-60)7-11-42)55-46(62)38-75-37-45(61)52-15-17-67-19-21-69-23-25-71-27-29-73-31-32-74-30-28-72-26-24-70-22-20-68-18-16-58-35-43(56-57-58)33-53-49(65)41-8-4-39(5-9-41)34-59-47(63)12-13-48(59)64/h6-7,10-13,35,39,41,44,60H,1-5,8-9,14-34,36-38,51H2,(H,52,61)(H,53,65)(H,54,66)(H,55,62)/t39?,41?,44-/m0/s1
Chemical Name
N-[[1-[2-[2-[2-[2-[2-[2-[2-[2-[2-[[2-[2-[[(2S)-6-amino-1-[4-(hydroxymethyl)anilino]-1-oxohexan-2-yl]amino]-2-oxoethoxy]acetyl]amino]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]triazol-4-yl]methyl]-4-[(2,5-dioxopyrrol-1-yl)methyl]cyclohexane-1-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 200 mg/mL (188.29 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.9414 mL 4.7072 mL 9.4143 mL
5 mM 0.1883 mL 0.9414 mL 1.8829 mL
10 mM 0.0941 mL 0.4707 mL 0.9414 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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