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Fmoc-Val-Ala-aminomethyl acetate

Cat No.:V76141 Purity: ≥98%
Fmoc-Val-Ala-aminomethyl acetate (Compound 58b) is an ADC Linker that may be utilized to prepare antibody drug conjugates (ADCs).
Fmoc-Val-Ala-aminomethyl acetate
Fmoc-Val-Ala-aminomethyl acetate Chemical Structure CAS No.: 2505045-86-1
Product category: ADC Linker
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Fmoc-Val-Ala-aminomethyl acetate (Compound 58b) is an ADC Linker that may be utilized to prepare antibody drug conjugates (ADCs).
Fmoc-Val-Ala-aminomethyl acetate (CAS#: 2505045-86-1) is a peptide-based ADC linker intermediate. The compound features an Fmoc protecting group, a dipeptide sequence (Val-Ala), and an aminomethyl acetate moiety. This structure enables controlled conjugation and enzyme-sensitive payload release in antibody-drug conjugates (ADCs). It is utilized in the synthesis of ADCs where the linker connects the antibody to a cytotoxic payload. The Fmoc group facilitates selective deprotection and stepwise assembly of the linker-payload complex. This product is intended for research and manufacturing use only, not for human therapeutic applications.
Biological Activity I Assay Protocols (From Reference)
Targets
Fmoc-Val-Ala-aminomethyl acetate itself does not have a direct biological target. Its role is as a linker component in ADCs, where it covalently attaches the antibody to a cytotoxic drug. Upon incorporation into an ADC, the Val-Ala dipeptide sequence serves as a cleavable moiety that is recognized by specific enzymes, such as cathepsin B, which are overexpressed in the tumor microenvironment. This enzymatic cleavage enables the targeted release of the cytotoxic payload inside cancer cells. Therefore, the relevant target is the intracellular protease that cleaves the Val-Ala linker, with the ultimate pharmacological target being the cancer cell's proliferative machinery affected by the released drug.
ln Vitro
There is no reported direct biological activity or in vitro efficacy for Fmoc-Val-Ala-aminomethyl acetate itself, as it is a synthetic chemical intermediate, not a biologically active compound. Its activity is defined by its utility as a research tool. In the context of ADC development, the linker is assessed in vitro for its stability in plasma and its cleavability by target proteases. The efficacy of an ADC containing this linker is evaluated in cell viability assays against specific cancer cell lines. The linker-payload conjugate's ability to be internalized and release the drug is confirmed through LC-MS/MS detection of the released payload in cell lysates.
ln Vivo
No in vivo activity is reported for Fmoc-Val-Ala-aminomethyl acetate as a standalone compound. Its in vivo evaluation is conducted as part of a complete ADC molecule that includes an antibody and a payload. In such constructs, the ADC's anti-tumor efficacy is assessed in mouse xenograft models, where it can lead to significant tumor growth inhibition. The safety and pharmacokinetics of the ADC are also evaluated in animal models to determine its therapeutic window. The linker's stability in circulation and efficient cleavage in the tumor microenvironment are critical for the ADC's in vivo performance.
Enzyme Assay
A typical non-cellular assay for this type of linker involves a stability test in human or mouse plasma. The linker-payload conjugate is incubated in plasma at 37degC for up to 24-48 hours. At predetermined time points, aliquots are taken, and proteins are precipitated. The supernatant is analyzed by LC-MS/MS to quantify the amount of intact linker-payload and released payload. This helps determine the linker's susceptibility to premature cleavage. Another assay uses purified cathepsin B to confirm enzyme-specific cleavage, where the linker is incubated with the enzyme in an appropriate buffer, and the release of the payload is monitored via HPLC or LC-MS.
Cell Assay
There is no cell-based assay for the linker alone. However, a standard in vitro protocol for evaluating an ADC containing this linker uses a panel of cancer cell lines. Cells are seeded in 96-well plates and treated with serial dilutions of the ADC. After 72-96 hours, cell viability is measured using a luminescent CellTiter-Glo assay to calculate the half-maximal inhibitory concentration (IC₅0). To confirm the mechanism, an excess of unconjugated antibody is used in a competition assay, and cytotoxicity is compared in protease-positive vs. protease-negative cell lines. Uptake and payload release are also visualized via confocal microscopy using fluorescently labeled ADCs.
Animal Protocol
Animal studies for the linker are conducted as part of an ADC. In a typical efficacy study, 5-6-week-old female BALB/c nude mice are implanted subcutaneously with 5 × 10⁶ cancer cells. When tumors reach an average size of 100-150 mm3, mice are randomized and treated intravenously with the ADC every 4 days for a total of 3-4 doses. Tumor volumes are measured twice weekly with calipers, and body weight is monitored as a safety indicator. At study termination, tumors are excised, weighed, and analyzed for proliferation markers (Ki-67). Tissues are also collected for biodistribution analysis of the payload.
ADME/Pharmacokinetics
Pharmacokinetic properties are not determined for the isolated linker but for the final ADC. A typical ADC has a long terminal half-life (t1/2) of several days in humans due to the antibody component. The clearance is slow, and volume of distribution is limited. The linker-payload conjugate is designed to be stable in circulation, with minimal release of the free payload in the bloodstream. The primary route of elimination for the ADC is proteolytic degradation, and the released payload is metabolized, primarily in the liver, and excreted in the feces.
Toxicity/Toxicokinetics
No toxicity data is available for Fmoc-Val-Ala-aminomethyl acetate alone. As a research reagent, standard safety precautions should be taken, assuming it is toxic. The toxicity of an ADC containing this linker is evaluated in preclinical models. Typical findings include bone marrow suppression and hepatotoxicity, which are often attributed to the payload and are dose-limiting. In animal models, a maximum tolerated dose (MTD) is established, and toxicities are monitored through body weight changes, complete blood counts (CBC), and serum chemistry analysis for liver and kidney function, which are correlated with histopathological findings in tissues.
References
[1]. Charng-Sheng TSAI, et al. Antibody drug conjugates. Patent. WO2023125530
Additional Infomation
Fmoc-Val-Ala-aminomethyl acetate is not a drug and is not approved for clinical use. It is exclusively a research-grade chemical intermediate for the synthesis of antibody-drug conjugates (ADCs) in oncology. Its mechanism of action is predicated on its use as a cleavable linker that is stable in systemic circulation but is specifically cleaved by intracellular proteases, such as cathepsins, within target cancer cells, enabling the targeted delivery and release of a cytotoxic payload. No clinical trials have been registered for this chemical. For research use only; not for human therapeutic or diagnostic use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Exact Mass
481.221
CAS #
2505045-86-1
PubChem CID
159391478
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
11
Heavy Atom Count
35
Complexity
750
Defined Atom Stereocenter Count
2
SMILES
C[C@@H](C(=O)NCOC(=O)C)NC(=O)[C@H](C(C)C)NC(=O)OCC1C2=CC=CC=C2C3=CC=CC=C13
InChi Key
MZBRJYLMNFPXHD-HJPURHCSSA-N
InChi Code
InChI=1S/C26H31N3O6/c1-15(2)23(25(32)28-16(3)24(31)27-14-35-17(4)30)29-26(33)34-13-22-20-11-7-5-9-18(20)19-10-6-8-12-21(19)22/h5-12,15-16,22-23H,13-14H2,1-4H3,(H,27,31)(H,28,32)(H,29,33)/t16-,23-/m0/s1
Chemical Name
[[(2S)-2-[[(2S)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-3-methylbutanoyl]amino]propanoyl]amino]methyl acetate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 50 mg/mL (103.83 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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