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Ac-Nle-Pro-Nle-Asp-AMC

Cat No.:V73366 Purity: ≥98%
Ac-Nle-Pro-Nle-Asp-AMC is a specific substrate of the 26S proteasome.
Ac-Nle-Pro-Nle-Asp-AMC
Ac-Nle-Pro-Nle-Asp-AMC Chemical Structure CAS No.: 355140-49-7
Product category: Proteasome
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Other Sizes
Official Supplier of:
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Product Description
Ac-Nle-Pro-Nle-Asp-AMC is a specific substrate of the 26S proteasome. Ac-Nle-Pro-Nle-Asp-AMC may be utilized to analyze 26S proteasome caspase-like activity.
Ac-Nle-Pro-Nle-Asp-AMC is a specific fluorogenic substrate for the 26S proteasome. It is cleaved by the caspase-like site (post-glutamyl peptide hydrolase, PGPH) of the proteasome, releasing the fluorescent AMC (7-amino-4-methylcoumarin) group. It is used for analyzing caspase-like proteasome activity in biochemical assays and drug discovery.
Biological Activity I Assay Protocols (From Reference)
Targets
26S proteasome (caspase-like site / post-glutamyl peptide hydrolase). Ac-Nle-Pro-Nle-Asp-AMC is a specific peptide substrate for the caspase-like activity of the proteasome.
ln Vitro
Ac-Nle-Pro-Nle-Asp-AMC is cleaved by the caspase-like site of the 26S proteasome with specific activities of 113 nmol/min/mg for rabbit muscle 26S proteasome and 6.6 nmol/min/mg for yeast 20S proteasome. The AMC moiety enables sensitive fluorescence detection of proteolytic cleavage.
ln Vivo
Ac-Nle-Pro-Nle-Asp-AMC is not a therapeutic agent but a research tool for measuring proteasome activity ex vivo. It has been used in animal tissue lysates to assess proteasome function in disease models, including studies of cancer, neurodegeneration, and muscle wasting, where proteasome activity is dysregulated.
Enzyme Assay
For non-cellular assays, purified 20S or 26S proteasome is incubated in assay buffer containing 50 mM Tris-HCl (pH 7.5), 1 mM DTT, and 5 mM MgCl2. Ac-Nle-Pro-Nle-Asp-AMC substrate is added at 50-100 microM final concentration. The reaction is incubated at 37degC for 30-60 min, and AMC fluorescence is measured at excitation 380 nm and emission 460 nm using a plate reader.
Cell Assay
Ac-Nle-Pro-Nle-Asp-AMC is typically not used directly in cell-based assays as a treatment; rather, cells are treated with drugs to modulate proteasome activity, then lysed. The lysate is incubated with the substrate to measure caspase-like proteasome activity. Results are normalized to protein concentration and/or expressed as fold-change relative to control.
Animal Protocol
For ex vivo activity measurement, animals are treated with test compounds, then tissues (liver, muscle, kidney, tumor) are harvested and homogenized in lysis buffer. Lysates are clarified by centrifugation, and protein concentration is quantified. Lysates are then incubated with Ac-Nle-Pro-Nle-Asp-AMC (100 microM) for 30-60 min at 37degC, and fluorescence is measured to determine proteasome caspase-like activity.
ADME/Pharmacokinetics
Ac-Nle-Pro-Nle-Asp-AMC itself has no significant pharmacokinetics as a molecule of interest; its stability in assay buffers (pH 7-8) is sufficient for standard proteasome activity measurements. It should be stored at -20degC, protected from light, and reconstituted in DMSO for a stable stock solution.
Toxicity/Toxicokinetics
Toxicity of Ac-Nle-Pro-Nle-Asp-AMC is not relevant as it is not used in vivo therapeutically. Standard laboratory safety precautions for handling fluorescent peptides should be followed, including avoiding inhalation and skin contact. It is intended for research use only.
References

[1]. The impact of specific oxidized amino acids on protein turnover in J774 cells. Biochem J. 2008 Feb 15;410(1):131-40.

[2]. An extract of Artemisia dracunculus L. inhibits ubiquitin-proteasome activity and preserves skeletal muscle mass in a murine model of diabetes. PLoS One. 2013;8(2):e57112.

[3]. Methylene Blue Inhibits Caspases by Oxidation of the Catalytic Cysteine. Sci Rep. 2015 Sep 24;5:13730.

Additional Infomation
Ac-Nle-Pro-Nle-Asp-AMC (CAS: 355140-49-7) has molecular formula C33H45N5O9 and molecular weight 655.74. The sequence is Acetyl-Norleucine-Proline-Norleucine-Aspartic acid-AMC. It is a valuable tool for dissecting the contribution of the caspase-like site to overall proteasome function, particularly in drug development for proteasome inhibitors such as bortezomib.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C33H45N5O9
Molecular Weight
655.74
Exact Mass
655.321
CAS #
355140-49-7
PubChem CID
131698166
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
902.2±75.0 °C at 760 mmHg
Flash Point
499.4±37.1 °C
Vapour Pressure
0.0±0.3 mmHg at 25°C
Index of Refraction
1.617
LogP
6.08
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
16
Heavy Atom Count
47
Complexity
1220
Defined Atom Stereocenter Count
4
SMILES
CCCC[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)NC1=CC2=C(C=C1)C(=CC(=O)O2)C)NC(=O)[C@@H]3CCCN3C(=O)[C@H](CCCC)NC(=O)C
InChi Key
WPTAROWBMZVECB-CQJMVLFOSA-N
InChi Code
InChI=1S/C33H45N5O9/c1-5-7-10-23(36-32(45)26-12-9-15-38(26)33(46)24(11-8-6-2)34-20(4)39)30(43)37-25(18-28(40)41)31(44)35-21-13-14-22-19(3)16-29(42)47-27(22)17-21/h13-14,16-17,23-26H,5-12,15,18H2,1-4H3,(H,34,39)(H,35,44)(H,36,45)(H,37,43)(H,40,41)/t23-,24-,25-,26-/m0/s1
Chemical Name
(3S)-3-[[(2S)-2-[[(2S)-1-[(2S)-2-acetamidohexanoyl]pyrrolidine-2-carbonyl]amino]hexanoyl]amino]-4-[(4-methyl-2-oxochromen-7-yl)amino]-4-oxobutanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 100 mg/mL (152.50 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.5250 mL 7.6250 mL 15.2499 mL
5 mM 0.3050 mL 1.5250 mL 3.0500 mL
10 mM 0.1525 mL 0.7625 mL 1.5250 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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