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Theobromine-d6 (3,7-Dimethylxanthine-d6)

Cat No.:V72745 Purity: ≥98%
Theobromine-d6 is the deuterated form of Theobromine.
Theobromine-d6 (3,7-Dimethylxanthine-d6)
Theobromine-d6 (3,7-Dimethylxanthine-d6) Chemical Structure CAS No.: 117490-40-1
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of Theobromine-d6 (3,7-Dimethylxanthine-d6):

  • Theobromine-d3 (3,7-Dimethylxanthine-d3)
  • Theobromine
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Theobromine-d6 is the deuterated form of Theobromine. Theobromine is a methylxanthine found in cocoa beans that can inhibit adenosine receptor A1 (AR1) signaling.
Theobromine-d6 (3,7-Dimethylxanthine-d6) is a deuterium-labeled form of theobromine, a methylxanthine alkaloid derivative of caffeine found primarily in cocoa beans. In theobromine-d6, six hydrogen atoms are replaced by deuterium, creating a mass shift of M+6 relative to the unlabeled compound. It is intended for use as an internal standard for the quantification of theobromine by GC- or LC-MS. Theobromine itself has diverse biological activities, including effects on adenosine receptors, anti-inflammatory properties, and potential cardiovascular benefits. The deuterated version allows precise analytical measurement of theobromine in biological samples without interference from the endogenous compound.
Biological Activity I Assay Protocols (From Reference)
Targets
Not applicable; Theobromine-d6 is primarily a stable isotope-labeled internal standard for analytical quantification. The unlabeled parent compound theobromine is an adenosine A1 receptor antagonist with IC₅0s of 200-280 microM in radioligand binding assays using rat brain membranes. Theobromine also increases AMPK phosphorylation, inhibits adipocyte differentiation and ERK/JNK phosphorylation, and reduces IL-6 and TNF-alpha production in 3T3-L1 preadipocytes. However, the deuterated version serves as an internal standard for quantifying theobromine, not as a pharmacological agent targeting these pathways.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as quantitative tracers while the drugs were being developed. Because deuteration may have an effect on a drug's pharmacokinetics and metabolic properties, it is a cause for concern [1].
Theobromine-d6 is intended for use as an internal standard and does not directly exert pharmacological effects in vitro. The unlabeled theobromine (1-1000 uM) increases AMPK phosphorylation and inhibits adipocyte differentiation, ERK and JNK phosphorylation, and IL-6 and TNF-alpha production in 3T3-L1 preadipocytes cultured in differentiation medium. Theobromine (150 microg/ml) increases AMPK phosphorylation and inhibits these inflammatory and differentiation markers. It also inhibits decreases in renal cortex SIRT1 activity and increases in NADPH oxidase-dependent ROS production in renal cells.
ln Vivo
In vivo, Theobromine-d6 is used as an internal standard and is not typically administered as a test compound. The unlabeled theobromine (5 mg/kg per day) inhibits decreases in renal cortex SIRT1 activity and increases in NADPH oxidase-dependent reactive oxygen species (ROS) production, as well as reduces kidney hypertrophy and albuminuria in a spontaneously hypertensive rat model of streptozotocin-induced diabetes. Theobromine also demonstrates toxic effects in dogs with an LD₅0 value of 250 to 500 mg/kg. It exhibits anti-inflammatory and cardiovascular benefits in various in vivo models.
Enzyme Assay
For quantitative LC-MS/MS analysis: Prepare a stock solution of Theobromine-d6 in DMF or DMSO at 10 mg/mL. Spike a known amount (e.g., 10-100 ng/mL) into biological samples (plasma, urine, tissue homogenates) as an internal standard. Protein precipitation with acetonitrile or methanol is followed by centrifugation. Separate on a C18 reverse-phase column using a mobile phase of 0.1% formic acid in water and acetonitrile. Detect using MRM transitions: for theobromine m/z 181 → 138; for Theobromine-d6 m/z 187 → 144 (mass shift of +6 due to six deuterium atoms). Quantify by isotope dilution method against a calibration curve.
Cell Assay
For cell-based quantification of theobromine, cells (e.g., 3T3-L1 preadipocytes) are cultured in differentiation medium. Harvest cells at various time points, wash with PBS, and lyse cells in methanol/water. Add Theobromine-d6 as an internal standard at a known concentration (e.g., 50 ng/mL). Centrifuge to remove debris, filter, and analyze the supernatant by LC-MS/MS as described in the assay protocol above. Quantify endogenous theobromine levels by comparing the peak area ratio of theobromine to Theobromine-d6 against a calibration curve. This method corrects for matrix effects, extraction efficiency, and ion suppression.
Animal Protocol
For in vivo pharmacokinetic studies, administer theobromine to animals (e.g., rats, mice) by oral gavage or intravenous injection at specific doses (e.g., 5 mg/kg). Collect blood samples at multiple time points (0, 0.5, 1, 2, 4, 6, 8, 12, 24 h) into heparinized tubes. Centrifuge to obtain plasma. Add Theobromine-d6 internal standard (e.g., 50-100 ng/mL) to each plasma sample. Precipitate proteins with acetonitrile, centrifuge, and analyze supernatant by LC-MS/MS. Calculate pharmacokinetic parameters including Cmax, Tmax, AUC, half-life, and bioavailability using non-compartmental analysis. This method accurately quantifies theobromine without endogenous interference.
ADME/Pharmacokinetics
Theobromine-d6: Molecular formula C₇H2D₆N4O2. Molecular weight: 186.20 g/mol (unlabeled theobromine 180.16). Purity: ≥99% deuterated forms (d1-d6). Appearance: A crystalline solid. Melting point: ~357degC. UV λmax: 273 nm. Solubility: DMF 10 mg/ml, DMSO 10 mg/ml, Ethanol 1 mg/ml, PBS (pH 7.2) 1 mg/ml. Storage: Store powder at -20degC. Shipping: Wet ice in continental US; may vary elsewhere. Protect from light and moisture. It is a controlled substance and not for sale in certain territories.
Toxicity/Toxicokinetics
Theobromine-d6 has low toxicity for analytical use at typical working concentrations. The unlabeled parent compound theobromine is toxic to dogs with an LD₅0 value of 250 to 500 mg/kg, but it is generally regarded as safe for human consumption in chocolate and cocoa products at normal dietary levels. Theobromine can cause adverse effects in humans at very high doses (e.g., theobromine poisoning), but the deuterated internal standard is used at trace levels (ng/mL to ug/mL) for analytical purposes, where it is considered safe. Standard laboratory safety precautions should be followed when handling the pure compound: wear gloves, lab coat, and safety glasses. Avoid inhalation of powder and contact with skin/eyes. Consult SDS for detailed safety information. Not for human therapeutic use.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019;53(2):211-216.

[2]. Theobromine suppresses adipogenesis through enhancement of CCAAT-enhancer-binding protein β degradation by adenosine receptor A1.

[3]. Effect of cocoa's theobromine on intestinal microbiota of rats. Mol Nutr Food Res. 2017 Oct;61(10).

Additional Infomation
Theobromine-D6 is an oxopurine.
Theobromine is a methylxanthine alkaloid and derivative of caffeine that has been found in cocoa beans and has diverse biological activities. Theobromine-d6 (3,7-Dimethylxanthine-d6) is a synthetic deuterated form where the methyl groups are labeled with deuterium. The compound is supplied as a high-purity analytical standard for research use only. It is not approved for human therapeutic use. In addition to its role as an internal standard, theobromine exhibits effects on adenosine receptors, anti-inflammatory properties, and potential cardiovascular benefits. The deuterated version is also available as a crystalline solid with a minimum purity of 99% deuterated forms (d1-d6). The product is a controlled substance and not for sale in certain territories. For research use only; we do not sell to patients.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C7H2D6N4O2
Molecular Weight
186.20
Exact Mass
186.102
CAS #
117490-40-1
Related CAS #
Theobromine;83-67-0
PubChem CID
53442231
Appearance
White to off-white solid powder
Melting Point
>300ºC
Index of Refraction
1.737
LogP
-0.8
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
0
Heavy Atom Count
13
Complexity
267
Defined Atom Stereocenter Count
0
SMILES
[2H]C([2H])([2H])N1C=NC2=C1C(=O)NC(=O)N2C([2H])([2H])[2H]
InChi Key
YAPQBXQYLJRXSA-WFGJKAKNSA-N
InChi Code
InChI=1S/C7H8N4O2/c1-10-3-8-5-4(10)6(12)9-7(13)11(5)2/h3H,1-2H3,(H,9,12,13)/i1D3,2D3
Chemical Name
3,7-bis(trideuteriomethyl)purine-2,6-dione
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 2.86 mg/mL (15.36 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.3706 mL 26.8528 mL 53.7057 mL
5 mM 1.0741 mL 5.3706 mL 10.7411 mL
10 mM 0.5371 mL 2.6853 mL 5.3706 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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