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Trimethylammonium chloride-d9

Cat No.:V72656 Purity: ≥98%
Trimethylammonium chloride-d9 is the deuterium labelled form of Trimethylammonium chloride.
Trimethylammonium chloride-d9
Trimethylammonium chloride-d9 Chemical Structure CAS No.: 18856-86-5
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
100mg
Other Sizes

Other Forms of Trimethylammonium chloride-d9:

  • Trimethylammonium chloride (Hegzadesil; Trimethylamine hydrochloric acid; Trimethylamine monohydrochloride)
  • Dextrosil KA ((3-Chloro-2-hydroxypropyl)trimethylammonium chloride)
  • Trimethylammonium chloride-d6 (Hegzadesil-d6; Trimethylamine hydrochloric acid-d6; Trimethylamine monohydrochloride-d6)
  • Decyltrimethylammonium chloride
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Trimethylammonium chloride-d9 is the deuterium labelled form of Trimethylammonium chloride. Trimethylammonium chloride is an endogenously produced metabolite.
Trimethylammonium chloride-d9 is the fully deuterium-labeled form of Trimethylammonium chloride (trimethylamine hydrochloride), where all nine hydrogen atoms on the three methyl groups are replaced with deuterium (d9). The molecular formula is C3H1D9ClN, and the molecular weight is 104.63. Trimethylammonium chloride is an endogenous metabolite produced during the breakdown of plants and animals. It is a non-competitive inhibitor of acetylcholinesterase (AChE) and also inhibits deacetylation. The deuterated version is used as a stable isotope internal standard in mass spectrometry for the quantification of trimethylamine and its hydrochloride salt in biological and environmental samples.
Biological Activity I Assay Protocols (From Reference)
Targets
As an analytical standard, Trimethylammonium chloride-d9 is not used for studying biological targets. The non-deuterated parent compound, Trimethylammonium chloride, is a non-competitive inhibitor of acetylcholinesterase (AChE), the enzyme responsible for hydrolyzing the neurotransmitter acetylcholine in the synaptic cleft. By inhibiting AChE, the compound increases acetylcholine levels. It is also an endogenous metabolite that inhibits deacetylation reactions, potentially interacting with histone deacetylases (HDACs) or other deacetylases. The compound is a product of choline metabolism by gut microbiota and is associated with trimethylaminuria (fish odor syndrome). The deuterated version shares these properties but is used as an analytical standard.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as quantitative tracers while the drugs were being developed. Because deuteration may have an effect on a drug's pharmacokinetics and metabolic properties, it is a cause for concern [1].
Trimethylammonium chloride-d9 is not used for in vitro activity studies; it serves exclusively as an analytical internal standard and tracer. The non-deuterated parent compound, Trimethylammonium chloride, has been studied in vitro as a non-competitive inhibitor of acetylcholinesterase (AChE). At concentrations of 1-100 mM, it inhibits AChE activity in a dose-dependent manner as measured by the Ellman method. It also inhibits deacetylation reactions, suggesting potential activity against histone deacetylases. However, the compound is primarily used as an analytical standard and as a tool for studying choline metabolism and gut microbiota function. The deuterated version is not used in activity assays; its sole purpose is analytical quantification.
ln Vivo
Trimethylammonium chloride-d9 is not intended for in vivo activity studies; it is used exclusively as an internal standard for analytical quantification. The non-deuterated parent compound, Trimethylammonium chloride, is an endogenous metabolite produced from dietary choline by gut microbiota. Elevated levels are associated with trimethylaminuria (fish odor syndrome), a genetic disorder caused by deficiency of flavin-containing monooxygenase 3 (FMO3). The compound is also associated with high-dose choline intake and is responsible for the fishy odor associated with decaying fish, bacterial vaginosis, and bad breath. The compound is not used therapeutically. The deuterated version is used to quantify trimethylamine levels in biological samples for diagnostic and research applications.
Enzyme Assay
For non-cellular assays (analytical quantification), Trimethylammonium chloride-d9 is prepared as a stock solution in water or methanol (1 mg/mL). For LC-MS/MS analysis, a calibration curve for trimethylamine is prepared in human plasma or urine (0.1-1000 ng/mL) with a fixed concentration of the deuterated internal standard (e.g., 50 ng/mL). Sample preparation: 100 uL plasma or urine + 20 uL internal standard + 880 uL acetonitrile for protein precipitation. After centrifugation, the supernatant is diluted with water (1:1) and injected onto a HILIC column (e.g., ZIC-HILIC) with a mobile phase of 10 mM ammonium acetate in water and acetonitrile (15:85, v/v, isocratic). MRM transitions: trimethylamine 60→44 (and 60→42), trimethylamine-d9 69→53 (and 69→49). For GC-MS analysis, samples are derivatized with pentafluoropropionic anhydride (PFPA) to form volatile derivatives. For AChE inhibition assays, the Ellman method is used as described for trimethylammonium chloride.
Cell Assay
For cell-based assays, Trimethylammonium chloride-d9 is not used for activity studies. For the non-deuterated compound, hepatocytes (e.g., HepG2 cells) or intestinal epithelial cells (e.g., Caco-2 cells) are seeded in 6-well plates (1×10⁶ cells/well) in DMEM with 10% FBS. To study trimethylamine production, cells are treated with choline (10-100 uM) or with gut bacterial lysates. Trimethylamine levels in culture medium are measured by LC-MS/MS using Trimethylammonium chloride-d9 as internal standard. For toxicity studies, cells are treated with trimethylamine (1-50 mM) for 24-72 hours, and cell viability is assessed by MTT assay. For mechanistic studies, the compound can be used to inhibit AChE or deacetylation, and the effects on acetylcholine levels or histone acetylation can be measured.
Animal Protocol
For in vivo animal experiments, Trimethylammonium chloride-d9 is not administered to animals as a drug. For pharmacokinetic studies of trimethylamine, animals are administered choline (50-200 mg/kg, oral) or trimethylamine (10-50 mg/kg, IV). Blood, urine, and fecal samples are collected at multiple time points. Trimethylammonium chloride-d9 (fixed concentration) is added to plasma, urine, or fecal extracts as internal standard before LC-MS/MS analysis to quantify trimethylamine levels. For trimethylaminuria models, FMO3 knockout mice are used, and trimethylamine levels in urine are measured using the deuterated standard. For gut microbiota studies, mice are treated with antibiotics to deplete gut bacteria, and the effect on trimethylamine production from choline is studied. For metabolic disease studies, high-choline diets are used to study the effects of elevated trimethylamine on cardiovascular disease risk.
ADME/Pharmacokinetics
Trimethylammonium chloride-d9 has a molecular weight of 104.63, with nine deuterium atoms providing a mass shift of +9 Da relative to non-deuterated trimethylammonium chloride (MW 95.57). The compound is a white to off-white crystalline powder, highly soluble in water (100 mg/mL) and methanol. It should be stored as a powder at -20degC for up to 3 years, and in solution at -80degC for up to 6 months or at -20degC for up to 1 month. The compound is hygroscopic and should be stored in a tightly sealed container. The deuterium label is stable and non-radioactive. The nine deuterium atoms result in a significantly higher mass, allowing for clear separation from endogenous trimethylamine in mass spectrometry.
Toxicity/Toxicokinetics
Trimethylammonium chloride-d9 is a stable isotope-labeled compound with minimal toxicity at analytical concentrations (ng-ug per sample). The non-deuterated parent compound, trimethylamine, is a volatile base with low acute toxicity (oral LD₅0 in rats: approximately 500 mg/kg). At high concentrations, trimethylamine can cause respiratory irritation, eye damage, and skin burns. However, when used as an internal standard, the amount is negligible and poses no toxicity risk. Standard laboratory safety precautions for handling amines should be followed (use of PPE, work in fume hood). The compound is non-radioactive and safe for research use.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019 Feb;53(2):211-216.

Additional Infomation
Trimethylammonium chloride-d9 is an analytical standard and research tool, not an approved drug. No clinical trials have been conducted with the deuterated version for therapeutic purposes. The non-deuterated parent compound, trimethylamine, is not a drug but is an endogenous metabolite and a clinical biomarker for trimethylaminuria (fish odor syndrome), a rare genetic disorder. Elevated urinary trimethylamine levels are diagnostic for this condition. Trimethylamine is also a marker for gut microbiota activity and is being studied for its role in cardiovascular disease (via conversion to trimethylamine N-oxide, TMAO). Trimethylammonium chloride-d9 is used as an internal standard for quantitative LC-MS/MS analysis of trimethylamine in clinical, environmental, and research settings, enabling accurate measurement of this metabolite in urine, plasma, and other biological samples. Available for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C3HD9CLN
Molecular Weight
104.63
Exact Mass
104.107
CAS #
18856-86-5
Related CAS #
Trimethylammonium chloride;593-81-7
PubChem CID
71310292
Appearance
White to off-white solid powder
Melting Point
283-284ºC(lit.)
LogP
0.979
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
1
Rotatable Bond Count
0
Heavy Atom Count
5
Complexity
8
Defined Atom Stereocenter Count
0
SMILES
[2H]C([2H])([2H])N(C([2H])([2H])[2H])C([2H])([2H])[2H].Cl
InChi Key
SZYJELPVAFJOGJ-KYRNGWDOSA-N
InChi Code
InChI=1S/C3H9N.ClH/c1-4(2)3;/h1-3H3;1H/i1D3,2D3,3D3;
Chemical Name
1,1,1-trideuterio-N,N-bis(trideuteriomethyl)methanamine;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O: 100 mg/mL (955.75 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 9.5575 mL 47.7874 mL 95.5749 mL
5 mM 1.9115 mL 9.5575 mL 19.1150 mL
10 mM 0.9557 mL 4.7787 mL 9.5575 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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