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6-Me-ATP (N6-Methyl-ATP)

Cat No.:V69845 Purity: ≥98%
6-Me-ATP (N6-Methyl-ATP) is an N6-modified ATP analogue.
6-Me-ATP (N6-Methyl-ATP)
6-Me-ATP (N6-Methyl-ATP) Chemical Structure CAS No.: 3130-39-0
Product category: GSK-3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
59mg(100 mM * 1 mL in Water)
Other Sizes

Other Forms of 6-Me-ATP (N6-Methyl-ATP):

  • 6-Me-ATP trisodium (N6-Methyl-ATP trisodium)
  • 6-Me-ATP trisodium solution (100 mM)
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
6-Me-ATP (N6-Methyl-ATP) is an N6-modified ATP analogue. 6-Me-ATP shows good binding affinity to GSK3 and can serve as a phosphate group donor for GSK3β to catalyze the phosphorylation of its substrate peptide.
6-Me-ATP (N6-Methyl-ATP) is an N6-modified adenosine triphosphate (ATP) derivative. With a molecular weight of 521.21 and formula C11H18N5O13P3, this compound shows excellent binding affinity to glycogen synthase kinase 3 (GSK3) and serves as the phosphate group donor for GSK3β-catalyzed phosphorylation of its substrate peptides. It is intended for research purposes only and is not for human therapeutic use. 6-Me-ATP is a valuable tool for studying kinase-substrate interactions and phosphorylation mechanisms.
Biological Activity I Assay Protocols (From Reference)
Targets
6-Me-ATP targets glycogen synthase kinase 3 (GSK3) by serving as a phosphate group donor for GSK3β-catalyzed phosphorylation. As an N6-modified ATP derivative, it exhibits strong binding affinity for GSK3, making it a useful tool for studying kinase-substrate interactions. The compound's modification at the N6 position of the adenine ring may alter its interaction with the ATP-binding pocket of kinases, providing insights into the structural requirements for nucleotide binding and phosphorylation catalysis. It is used in proteome-wide characterizations of ATP-binding capabilities of kinases.
ln Vitro
In vitro, 6-Me-ATP shows excellent binding affinity to GSK3 and serves as the phosphate group donor for GSK3β-catalyzed phosphorylation of its substrate peptide. As an N6-modified ATP derivative, it is used to study kinase-substrate interactions and phosphorylation mechanisms. The compound has been characterized in proteome-wide studies to investigate the binding capabilities of kinases. Its modified structure allows researchers to probe the specificity and selectivity of ATP-binding pockets in various kinases. Detailed in vitro characterization data are available in the primary literature.
ln Vivo
In vivo studies of 6-Me-ATP are limited in publicly available literature, as the compound is primarily used as a biochemical tool for in vitro kinase assays rather than as a therapeutic agent. As an ATP analog, it is not typically administered in vivo due to its role as a phosphate donor and its likely rapid metabolism. The compound is used in research settings to study kinase-substrate interactions and phosphorylation mechanisms. No specific in vivo efficacy data or animal model studies have been reported.
Enzyme Assay
For GSK3β kinase activity assays using 6-Me-ATP as the phosphate donor, recombinant human GSK3β enzyme is incubated with peptide substrates and varying concentrations of 6-Me-ATP in appropriate reaction buffer. Kinase activity is measured by quantifying substrate phosphorylation using radioactive [γ-33P]-labeled 6-Me-ATP or by detecting phosphorylated product using mass spectrometry or antibody-based methods. The Km and Vmax for 6-Me-ATP can be determined from Michaelis-Menten kinetics. Assays are performed in triplicate with appropriate vehicle controls and ATP as a reference phosphate donor.
Cell Assay
For in vitro cellular assays, 6-Me-ATP is not typically used as a cell-permeable compound due to its highly charged phosphate groups. It is primarily used in cell-free kinase assays rather than in intact cell models. For studies requiring intracellular ATP analog delivery, specialized techniques such as microinjection or permeabilized cell systems may be employed. Researchers should consult the primary literature for specific protocols involving cellular delivery of modified nucleotides. Each concentration is tested in replicate with appropriate controls.
Animal Protocol
For in vivo animal studies of 6-Me-ATP, no specific published protocols are available. As an ATP analog with multiple phosphate groups, the compound is unlikely to be suitable for in vivo administration due to poor cell permeability and rapid metabolism. The compound is primarily used as a research tool in biochemical assays rather than for in vivo pharmacological studies. All procedures must follow institutional animal care and use committee guidelines.
ADME/Pharmacokinetics
Pharmacokinetic properties of 6-Me-ATP are characteristic of a nucleotide analog. The compound has a molecular weight of 521.21, formula C11H18N5O13P3, and CAS number 3130-39-0. Purity: >95% HPLC. Salt form: Sodium. Appearance: 10 mM aqueous solution of pH 7.6. Storage temperature: -70°C. Stability and solubility advice: information concerning product stability, particularly in solution, has rarely been reported. Specific pharmacokinetic parameters such as half-life, clearance, and bioavailability are not applicable for this biochemical reagent.
Toxicity/Toxicokinetics
According to available safety information, 6-Me-ATP is intended for research purposes only and is not for human use. Standard laboratory safety precautions should be followed when handling this compound, including the use of appropriate personal protective equipment (gloves, lab coat, safety goggles). The compound should be handled in a well-ventilated area. Avoid dust formation and inhalation. In case of skin contact, wash with plenty of soap and water. In case of eye contact, rinse cautiously with water for several minutes. No clinical toxicity data are available.
References

[1]. Proteome-Wide Characterizations of N6-Methyl-Adenosine Triphosphate- and N6-Furfuryl-Adenosine Triphosphate-Binding Capabilities of Kinases. Anal Chem. 2021 Oct 5;93(39):13251-13259.

Additional Infomation
6-Me-ATP (N6-Methyl-ATP) is an N6-modified ATP derivative that shows excellent binding affinity to GSK3 and serves as a phosphate donor for GSK3β-catalyzed phosphorylation. It has a molecular weight of 521.21 and formula C11H18N5O13P3. The compound is used in proteome-wide characterizations of kinase binding capabilities. It is for research use only with no clinical development or regulatory approvals reported.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H18N5O13P3
Molecular Weight
521.21
Exact Mass
521.011
CAS #
3130-39-0
Related CAS #
6-Me-ATP trisodium
PubChem CID
23279502
Appearance
Typically exists as solid at room temperature
Hydrogen Bond Donor Count
7
Rotatable Bond Count
9
Heavy Atom Count
32
Complexity
816
Defined Atom Stereocenter Count
4
SMILES
C(OP(=O)(O)OP(O)(=O)OP(O)(O)=O)[C@H]1O[C@@H](N2C3C(=C(N=CN=3)NC)N=C2)[C@H](O)[C@@H]1O
InChi Key
LCQWKKZWHQFOAH-IOSLPCCCSA-N
InChi Code
InChI=1S/C11H18N5O13P3/c1-12-9-6-10(14-3-13-9)16(4-15-6)11-8(18)7(17)5(27-11)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h3-5,7-8,11,17-18H,2H2,1H3,(H,22,23)(H,24,25)(H,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1
Chemical Name
[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(methylamino)purin-9-yl]oxolan-2-yl]methoxy-hydroxyphosphoryl] phosphono hydrogen phosphate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9186 mL 9.5931 mL 19.1861 mL
5 mM 0.3837 mL 1.9186 mL 3.8372 mL
10 mM 0.1919 mL 0.9593 mL 1.9186 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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