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BTKligand 1

Cat No.:V69686 Purity: ≥98%
BTK ligand 1 (Compound 1) is a ligand targeting Bruton's tyrosine kinase (Btk).
BTKligand 1
BTKligand 1 Chemical Structure CAS No.: 330785-90-5
Product category: Btk
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
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Product Description
BTK ligand 1 (Compound 1) is a ligand targeting Bruton's tyrosine kinase (Btk). BTK ligand 1 can combine with E3 ligase ligand (Ligand for E3 Ligase) through PROTAC (PROteolysis TArgeting Chimera) linker to form PROTAC. PROTACs targeting Btk may be useful in the study of chronic lymphocytic leukemia (CLL) and other BK cell malignancies.
BTK ligand 1 (CAS 330785-90-5) is a ligand that targets Bruton's tyrosine kinase (Btk). It is also known as N-piperidine Ibrutinib, with the chemical name 3-(4-phenoxyphenyl)-1-(piperidin-4-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine. BTK ligand 1 is an impurity of Ibrutinib and is primarily used as a building block in the synthesis of PROTACs (PROteolysis TArgeting Chimeras) targeting Btk. It has a molecular weight of 386.45 g/mol and a molecular formula of C22H22N6O.
Biological Activity I Assay Protocols (From Reference)
Targets
BTK ligand 1 targets Bruton's tyrosine kinase (Btk). It is a ligand that can bind to Btk. This compound is used as a targeting moiety in the design of PROTACs, which are bifunctional molecules that recruit an E3 ubiquitin ligase to a target protein to induce its degradation. The ligand binds to the ATP-binding pocket of Btk, providing the targeting specificity for the PROTAC molecule.
ln Vitro
BTK ligand 1 is a ligand that binds to Btk. Its in vitro activity is characterized by its ability to bind to Btk. It is not typically evaluated as a standalone inhibitor but as a component of PROTAC molecules. The compound can be combined with an E3 ligase ligand through a PROTAC linker to form a PROTAC. The binding affinity of the ligand to Btk is a key parameter in the design of effective PROTACs.
ln Vivo
BTK ligand 1 is used as a building block for the synthesis of PROTACs. These PROTACs targeting Btk are designed to degrade the BTK protein and can be used in the study of chronic lymphocytic leukemia (CLL) and other B-cell malignancies. The in vivo activity is typically assessed for the resulting PROTAC molecules. The PROTACs induce degradation of BTK, leading to inhibition of BCR signaling and antitumor effects.
Enzyme Assay
The in vitro enzyme/receptor binding (non-cell-based) assay for BTK ligand 1 involves assessing its binding affinity to BTK. Surface plasmon resonance or other biophysical methods are used to measure the binding affinity of the ligand to recombinant BTK. This confirms its ability to serve as a targeting ligand. The binding affinity (Kd) is determined from these assays.
Cell Assay
The in vitro cell-based assay for BTK ligand 1 is typically performed as part of the characterization of the PROTAC molecules that incorporate it. Cells are treated with the PROTAC, and the degradation of BTK protein is measured by Western blotting. The ligand itself is not usually tested in cell-based assays as a standalone compound. The efficacy of the PROTAC is assessed by its ability to induce BTK degradation and inhibit downstream signaling.
Animal Protocol
In vivo animal experiments for BTK ligand 1 are not typically performed for the ligand itself. Instead, the in vivo activity is evaluated for the PROTAC molecules that incorporate BTK ligand 1 as a targeting moiety. In xenograft models, the efficacy of BTK-degrading PROTACs is assessed by measuring tumor growth inhibition. The pharmacokinetic and pharmacodynamic properties of the PROTACs are evaluated in these studies.
ADME/Pharmacokinetics
BTK ligand 1 has a molecular weight of 386.45 g/mol and a molecular formula of C22H22N6O. It has a purity of ≥98%. The compound is typically stored at -20°C. It is soluble in DMSO. It is typically used for research purposes only.
Toxicity/Toxicokinetics
As a research compound, its safety profile is evaluated in standard cytotoxicity and acute toxicity assays. The compound is classified for research use only and is not intended for human therapeutic use. Comprehensive toxicological characterization would be required prior to any clinical development. The compound is typically handled with standard laboratory safety precautions.
References

[1]. Targeting the C481S Ibrutinib-Resistance Mutation in Bruton's Tyrosine Kinase Using PROTAC-Mediated Degradation. Biochemistry. 2018 Jul 3;57(26):3564-3575.

Additional Infomation
BTK ligand 1 (CAS 330785-90-5) is a ligand that targets Bruton's tyrosine kinase (Btk). It has a molecular weight of 386.45 and a molecular formula of C22H22N6O. It is primarily used as a building block for the synthesis of PROTACs targeting Btk. It is not approved for clinical use and is available only for research purposes. The compound is also known as N-piperidine Ibrutinib.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H22N6O
Molecular Weight
386.45
Exact Mass
386.185
CAS #
330785-90-5
PubChem CID
22347262
Appearance
Typically exists as solid at room temperature
LogP
3.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
4
Heavy Atom Count
29
Complexity
515
Defined Atom Stereocenter Count
0
SMILES
C1CNCCC1N2C3=NC=NC(=C3C(=N2)C4=CC=C(C=C4)OC5=CC=CC=C5)N
InChi Key
LGWZZMCTBPCKHR-UHFFFAOYSA-N
InChi Code
InChI=1S/C22H22N6O/c23-21-19-20(15-6-8-18(9-7-15)29-17-4-2-1-3-5-17)27-28(22(19)26-14-25-21)16-10-12-24-13-11-16/h1-9,14,16,24H,10-13H2,(H2,23,25,26)
Chemical Name
3-(4-phenoxyphenyl)-1-piperidin-4-ylpyrazolo[3,4-d]pyrimidin-4-amine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5877 mL 12.9383 mL 25.8766 mL
5 mM 0.5175 mL 2.5877 mL 5.1753 mL
10 mM 0.2588 mL 1.2938 mL 2.5877 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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