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3-Hydroxyphenylboronic acid pinacol ester

Cat No.:V69072 Purity: ≥98%
3-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)phenol is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
3-Hydroxyphenylboronic acid pinacol ester
3-Hydroxyphenylboronic acid pinacol ester Chemical Structure CAS No.: 214360-76-6
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
3-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)phenol is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
3-Hydroxyphenylboronic acid pinacol ester (CAS 214360-76-6), also known as 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenol, is an organoboron compound with the molecular formula C₁₂H₁₇BO₃ and a molecular weight of 220.07 g/mol. This compound is a biochemical reagent that may be utilized as a biomaterial or organic/chemical reagent for biomedical research. The pinacol ester protects the boronic acid functionality, enhancing stability and solubility in organic solvents for Suzuki-Miyaura cross-coupling reactions. The phenolic hydroxyl group provides a handle for further functionalization. This compound is a valuable building block for pharmaceutical synthesis and medicinal chemistry research.
Biological Activity I Assay Protocols (From Reference)
Targets
3-Hydroxyphenylboronic acid pinacol ester does not have a defined primary drug target as it is a chemical reagent and synthetic building block rather than a therapeutic agent. However, boronic acid-containing compounds have been extensively studied as proteasome inhibitors (e.g., bortezomib) and as inhibitors of serine proteases, β-lactamases, and other enzymes containing nucleophilic active-site residues. The boronic acid moiety can form reversible covalent bonds with hydroxyl and amino groups in biological molecules. The phenolic group can participate in hydrogen bonding and other interactions. Compounds synthesized using this reagent as a building block may target various enzymes.
ln Vitro
As a synthetic reagent, 3-Hydroxyphenylboronic acid pinacol ester is not typically evaluated for direct in vitro biological activity against specific molecular targets. Boronic acids in general are known to interact with diols and carbohydrates, and some derivatives exhibit enzyme inhibitory activity. However, the parent compound is used primarily as a chemical tool rather than a bioactive molecule. Its activity in biological assays would depend on the specific context and concentration, and any observed effects are generally considered incidental.
ln Vivo
In vivo activity data for 3-Hydroxyphenylboronic acid pinacol ester itself is not available, as the compound is not intended for therapeutic use. Drug candidates synthesized using this boronic ester as a building block may be evaluated in animal models for various indications, but the biological activity is attributed to the final drug molecule rather than the boronic ester reagent. The compound's primary applications remain in chemical synthesis and medicinal chemistry research.
Enzyme Assay
Cell-free biochemical assays involving 3-Hydroxyphenylboronic acid pinacol ester typically focus on its use as a reagent in Suzuki-Miyaura coupling reactions. A standard protocol involves mixing the boronic ester with an aryl halide, a palladium catalyst (e.g., Pd(PPh₃)₄ or PdCl₂(dppf)), and a base (e.g., K₂CO₃ or Cs₂CO₃) in an appropriate solvent such as THF, dioxane, or DMF/water mixture. The reaction is typically heated to 80-100°C for several hours under inert atmosphere, and progress is monitored by TLC or GC-MS. The product is isolated by extraction and purified by column chromatography. The pinacol ester is typically deprotected to the free boronic acid under acidic conditions before biological testing.
Cell Assay
Cell-based assays are not typically performed with 3-Hydroxyphenylboronic acid pinacol ester as the compound is a chemical reagent. For drug molecules synthesized using this reagent, standard cell-based protocols would apply depending on the target indication. For example, cancer cell lines may be treated with the synthesized compound at concentrations ranging from 0.1-100 μM for 24-72 hours, and cell viability assessed by MTT or CellTiter-Glo assays. The boronic ester reagent itself may be used as a control to confirm that observed activity is due to the final compound structure.
Animal Protocol
In vivo studies are not typically conducted with 3-Hydroxyphenylboronic acid pinacol ester itself. For drug candidates synthesized using this reagent, standard in vivo efficacy studies involve rodent models of the target disease. A typical protocol includes oral or intravenous administration of the test compound at various doses, with monitoring of disease progression through appropriate endpoints. The boronic acid moiety in drug molecules can contribute to target engagement through reversible covalent binding to active-site residues. The pinacol ester is typically hydrolyzed to the active boronic acid form in vivo.
ADME/Pharmacokinetics
As a chemical reagent rather than a drug, comprehensive pharmacokinetic data for 3-Hydroxyphenylboronic acid pinacol ester is not available. The compound's molecular weight is 220.07 g/mol. The pinacol ester protects the boronic acid, enhancing stability and lipophilicity. For drug molecules containing boronic acid moieties, the pinacol ester is typically a prodrug that is hydrolyzed to the active boronic acid in vivo. PK parameters depend on the overall molecular structure and are determined empirically.
Toxicity/Toxicokinetics
Toxicological data specific to 3-Hydroxyphenylboronic acid pinacol ester is limited. As with all boronic esters and chemical reagents, standard laboratory safety precautions should be observed when handling this compound. The compound may cause irritation upon skin or eye contact, and inhalation of dust should be avoided. For drug candidates synthesized using this reagent, comprehensive toxicological evaluation is required as part of the drug development process.
Additional Infomation
3-Hydroxyphenylboronic acid pinacol ester is a research chemical and synthetic reagent rather than an approved pharmaceutical agent. No clinical trials or regulatory approvals exist for this compound itself. It is commercially available from various chemical suppliers for research purposes only. The compound's primary value lies in its utility as a building block in Suzuki-Miyaura cross-coupling reactions for the synthesis of biaryls and other complex organic molecules. The phenolic hydroxyl group provides a handle for further functionalization, making this compound a versatile intermediate for pharmaceutical synthesis and medicinal chemistry research.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H17BO3
Molecular Weight
220.07
Exact Mass
220.127
CAS #
214360-76-6
PubChem CID
2734623
Appearance
White to off-white solid powder
Density
1.1±0.1 g/cm3
Boiling Point
343.6±25.0 °C at 760 mmHg
Melting Point
94-98 °C(lit.)
Flash Point
161.6±23.2 °C
Vapour Pressure
0.0±0.8 mmHg at 25°C
Index of Refraction
1.515
LogP
1.691
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
1
Heavy Atom Count
16
Complexity
249
Defined Atom Stereocenter Count
0
SMILES
O1B(C2C([H])=C([H])C([H])=C(C=2[H])O[H])OC(C([H])([H])[H])(C([H])([H])[H])C1(C([H])([H])[H])C([H])([H])[H]
InChi Key
MUKIFYQKIZOYKT-UHFFFAOYSA-N
InChi Code
InChI=1S/C12H17BO3/c1-11(2)12(3,4)16-13(15-11)9-6-5-7-10(14)8-9/h5-8,14H,1-4H3
Chemical Name
3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.5440 mL 22.7200 mL 45.4401 mL
5 mM 0.9088 mL 4.5440 mL 9.0880 mL
10 mM 0.4544 mL 2.2720 mL 4.5440 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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