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2-Pyrazinecarboxylic acid

Pyrazine-2-carboxylic acid is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
2-Pyrazinecarboxylic acid
2-Pyrazinecarboxylic acid Chemical Structure CAS No.: 98-97-5
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
250g
Other Sizes

Other Forms of 2-Pyrazinecarboxylic acid:

  • Pyrazinecarboxylic acid-d3
Official Supplier of:
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Product Description
Pyrazine-2-carboxylic acid is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
2-Pyrazinecarboxylic acid (CAS 98-97-5), also known as pyrazinoic acid or pyrazine-2-carboxylic acid, is a nitrogen-containing heterocyclic compound with the molecular formula C₅H₄N₂O₂ and a molecular weight of 124.10 g/mol. It appears as white needle-like crystals with a melting point of 225°C (decomposes), soluble in hot water but insoluble in ether, chloroform, and benzene. This compound is a very potent urate-retaining drug and is the active metabolite of the antibacterial agent pyrazinamide (P840600). It is valued in pharmaceutical and biochemical research for its potential antimicrobial and anti-inflammatory properties.
Biological Activity I Assay Protocols (From Reference)
Targets
2-Pyrazinecarboxylic acid targets urate retention pathways in the kidney, making it a very potent urate-retaining drug. As the active metabolite of pyrazinamide, it also targets the mycobacterial enzyme responsible for pyrazinamide's antibacterial activity. The compound's mechanism involves inhibition of urate excretion in the kidney, leading to increased serum urate levels. In the context of tuberculosis treatment, pyrazinoic acid (the active form) disrupts mycobacterial membrane energetics and inhibits fatty acid synthesis. The compound's nitrogen-containing heterocyclic structure enables interactions with various biological targets through hydrogen bonding and π-stacking.
ln Vitro
Pyrazinecarboxylic acid is pyrazinamide's active metabolite. An agent that fights tuberculosis is pyrazinamide. Probenecid decreased the urine excretion of pyrazinecarboxylic acid in this model used to evaluate the effects of uricosuric medications, suggesting an inverse link between urate and pyrazinecarboxylic acid excretion. In vitro experiments have shown that pyrazinecarboxylic acid stimulation of vesicles in the rat kidney's brush border membrane promotes urate absorption, which is prevented by uricosuric medications. Plant cells use PZA (pyrazinamide) to convert it to POA (pyrazinecarboxylic acid), which inhibits the action of 1-aminocyclopropane-1-carboxylic acid oxidase (ACO), the enzyme that catalyzes the last step in the production of ethylene.
In vitro studies have demonstrated that 2-pyrazinecarboxylic acid exhibits potent urate-retaining activity, making it a valuable tool for studying urate homeostasis. The compound also shows antimicrobial activity as the active metabolite of pyrazinamide. In cell-based assays, pyrazinoic acid inhibits mycobacterial growth through disruption of membrane energetics. The compound has been studied for its potential antimicrobial and anti-inflammatory properties. Its activity is dependent on the conversion of pyrazinamide to pyrazinoic acid by the bacterial enzyme pyrazinamidase.
ln Vivo
In vivo studies have established 2-pyrazinecarboxylic acid as the active metabolite responsible for the antibacterial activity of pyrazinamide. Following administration of pyrazinamide, the compound is converted to pyrazinoic acid in vivo, which then exerts its antibacterial effects. The compound's urate-retaining activity has been characterized in animal models and humans, where it effectively reduces urate excretion. Its role as a metabolite of an approved antibacterial agent makes it an important compound for understanding drug metabolism and mechanism of action.
Enzyme Assay
Cell-free biochemical assays for 2-pyrazinecarboxylic acid typically measure inhibition of target enzymes or binding to relevant proteins. For studying its role as a pyrazinamide metabolite, assays may involve measuring conversion of pyrazinamide to pyrazinoic acid by pyrazinamidase using HPLC or spectrophotometric methods. For urate retention studies, the compound's effects on urate transporters can be assessed using membrane preparations. IC₅₀ or Ki values are determined from dose-response curves using nonlinear regression analysis. The compound's purity (typically ≥99%) is verified by HPLC. Assays are performed in triplicate with appropriate positive and negative controls.
Cell Assay
Cellular assays for 2-pyrazinecarboxylic acid typically use mycobacterial cultures to assess antibacterial activity or kidney cell lines to study urate transport. A standard protocol for antibacterial testing involves culturing Mycobacterium tuberculosis or other mycobacterial species in appropriate media, treating with varying concentrations of the compound (1-100 μg/mL) for 7-14 days, and measuring growth inhibition by colony counting or optical density. For urate transport studies, kidney epithelial cells are treated with the compound and urate uptake or efflux is measured using radiolabeled urate. Cell viability is assessed to confirm that observed effects are not due to cytotoxicity.
Animal Protocol
In vivo studies for 2-pyrazinecarboxylic acid are typically conducted in mouse models of tuberculosis or in rodent models of urate metabolism. For antibacterial studies, mice are infected with Mycobacterium tuberculosis and treated with pyrazinamide (which is converted to the active acid in vivo) at doses of 100-300 mg/kg daily for several weeks. Bacterial burden in lungs and spleen is assessed by colony counting. For urate retention studies, rodents are administered the compound and serum urate levels are measured over time. Pharmacodynamic effects are assessed through appropriate biomarkers.
ADME/Pharmacokinetics
Pharmacokinetic studies of 2-pyrazinecarboxylic acid have been conducted as part of pyrazinamide research. Following administration of pyrazinamide, pyrazinoic acid is produced and exhibits a half-life that allows for once-daily dosing in tuberculosis treatment. The compound's molecular weight is 124.10 g/mol, and it is water-soluble, which facilitates absorption and distribution. The compound is primarily excreted renally. Its role as an active metabolite means its PK profile is closely linked to that of the parent drug pyrazinamide.
Toxicity/Toxicokinetics
Toxicological data for 2-pyrazinecarboxylic acid is available from pyrazinamide studies, where it is the active metabolite. The compound's safety profile has been established through clinical use of pyrazinamide. Common adverse effects associated with pyrazinamide therapy include hepatotoxicity, hyperuricemia (due to the urate-retaining activity of pyrazinoic acid), and gastrointestinal disturbances. The urate-retaining effect can lead to gout in susceptible individuals. The compound should be used with caution in patients with hepatic impairment or pre-existing gout. Comprehensive toxicology assessments have been conducted to support clinical use.
Additional Infomation
Pyrazine-2-carboxylic acid is the parent compound of the pyrazine carboxylic acid class of compounds, i.e., a pyrazine with a single carboxyl substituent. It is the active metabolite of the anti-tuberculosis drug pyrazinamide. It is both a drug metabolite and an anti-tuberculosis agent. It is the conjugate acid of pyrazine-2-carboxylic acid salt. Pyrazine acid is present in or produced by Escherichia coli (K12 strain, MG1655 strain). Pyrazine-2-carboxylic acid has also been reported to exist in Trypanosoma brevicornu, and relevant data are available.
2-Pyrazinecarboxylic acid is a pharmacologically active compound as the metabolite of the antibacterial agent pyrazinamide (P840600). Pyrazinamide is approved for the treatment of tuberculosis and is a critical component of first-line anti-TB therapy. The conversion of pyrazinamide to pyrazinoic acid by mycobacterial pyrazinamidase is essential for its antibacterial activity. The compound's urate-retaining properties are responsible for the hyperuricemia observed as a side effect of pyrazinamide therapy. 2-Pyrazinecarboxylic acid is also studied for its potential antimicrobial and anti-inflammatory properties. It is commercially available for research purposes.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C5H4N2O2
Molecular Weight
124.10
Exact Mass
124.027
CAS #
98-97-5
Related CAS #
Pyrazinecarboxylic acid-d3;1794791-32-4
PubChem CID
1047
Appearance
White to off-white solid powder
Density
1.4±0.1 g/cm3
Boiling Point
313.1±22.0 °C at 760 mmHg
Melting Point
222-225 °C (dec.)(lit.)
Flash Point
143.1±22.3 °C
Vapour Pressure
0.0±0.7 mmHg at 25°C
Index of Refraction
1.579
LogP
-1.36
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
1
Heavy Atom Count
9
Complexity
116
Defined Atom Stereocenter Count
0
SMILES
O([H])C(C1C([H])=NC([H])=C([H])N=1)=O
InChi Key
NIPZZXUFJPQHNH-UHFFFAOYSA-N
InChi Code
InChI=1S/C5H4N2O2/c8-5(9)4-3-6-1-2-7-4/h1-3H,(H,8,9)
Chemical Name
pyrazine-2-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 8.0580 mL 40.2901 mL 80.5802 mL
5 mM 1.6116 mL 8.0580 mL 16.1160 mL
10 mM 0.8058 mL 4.0290 mL 8.0580 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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