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5-Bromo-2-chloropyridine (2-Chloro-5-bromopyridine)

Cat No.:V69035 Purity: ≥98%
5-Bromo-2-chloropyridine (2-Chloro-5-bromopyridine) is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
5-Bromo-2-chloropyridine (2-Chloro-5-bromopyridine)
5-Bromo-2-chloropyridine (2-Chloro-5-bromopyridine) Chemical Structure CAS No.: 53939-30-3
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
5-Bromo-2-chloropyridine (2-Chloro-5-bromopyridine) is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
5-Bromo-2-chloropyridine (CAS#: 53939-30-3) is a halogenated heteroaromatic compound with the molecular formula C5H3BrClN and a molecular weight of 192.44 g/mol. It features a pyridine ring substituted with a bromine atom at the 5-position and a chlorine atom at the 2-position, and appears as a pale yellow to off-white crystalline solid with a melting point of 68-73°C. The compound's dual halogen substitution provides useful reactive sites for cross-coupling reactions, such as Suzuki or Buchwald-Hartwig couplings, enabling the development of more complex heterocyclic or bioactive compounds in medicinal chemistry. It is widely used as an intermediate in the synthesis of pharmaceuticals, agrochemicals, and organic materials. In the pharmaceutical industry, it is crucial for synthesizing various drugs, including olanzapine, an antipsychotic medication used to treat schizophrenia and bipolar disorder. The compound serves as an important intermediate in creating anti-inflammatory and antimicrobial agents. It is also used in the formulation of agrochemicals, including herbicides and fungicides, and in the development of advanced materials such as polymers and coatings.
Biological Activity I Assay Protocols (From Reference)
Targets
5-Bromo-2-chloropyridine does not have a specific primary biological target, as it functions primarily as a synthetic intermediate in pharmaceutical and agrochemical development rather than a direct-acting drug. However, its derivatives and the compounds synthesized using it may target various biological pathways. For example, olanzapine, which is synthesized using this compound as an intermediate, targets serotonin and dopamine receptors in the central nervous system for the treatment of schizophrenia and bipolar disorder. The compound is used in the synthesis of anti-inflammatory and antimicrobial agents, suggesting that its derivatives may target inflammatory mediators or microbial pathogens. In biochemical research, the compound is utilized in the study of biochemical pathways and interactions, aiding in the discovery of new therapeutic targets. Its role as a versatile building block in organic synthesis allows chemists to create complex molecules efficiently.
ln Vitro
In vitro, 5-bromo-2-chloropyridine is used in palladium-catalyzed amination to prepare amino-2-chloropyridine derivatives, and in halogen-exchange reactions to produce 5-bromo-2-fluoropyridine using anhydrous potassium fluoride. It is also employed in cross-coupling reactions such as Suzuki and Buchwald-Hartwig couplings to construct complex heterocyclic scaffolds. The compound serves as a key intermediate in the synthesis of various pharmaceuticals, particularly in creating anti-inflammatory and antimicrobial agents. In material science, it is used in the development of advanced materials such as polymers and coatings due to its unique chemical properties that improve durability and performance. In biochemical research, it aids in the study of biochemical pathways and interactions. The compound's dual halogen substitution allows for selective functionalization, making it a valuable tool for medicinal chemistry and drug discovery.
ln Vivo
In vivo studies are not typically performed with 5-bromo-2-chloropyridine itself, as it is a synthetic intermediate rather than a pharmacological agent. However, its derivatives and the pharmaceuticals synthesized using it may be evaluated in animal models. For example, olanzapine, which is synthesized using this compound as an intermediate, has been extensively studied in animal models for its antipsychotic effects and safety profile. The compound's use in the synthesis of anti-inflammatory and antimicrobial agents suggests that its derivatives may be evaluated in animal models of inflammation and infection. However, specific in vivo studies on the parent compound are not documented, as it is not intended for direct therapeutic use.
Enzyme Assay
Cell-free assays involving 5-bromo-2-chloropyridine are primarily focused on its use as a chemical reagent. Standard cross-coupling protocols involve mixing the compound with a boronic acid or amine (1.2 equivalents), a palladium catalyst (2-5 mol%), a base, and an appropriate solvent at 80-120°C for 12-24 hours under an inert atmosphere. The reaction progress is monitored by TLC or HPLC, and the product is purified by column chromatography. For amination reactions, the compound is reacted with amines in the presence of a palladium catalyst and a base. For halogen-exchange reactions, it is treated with anhydrous potassium fluoride to produce 5-bromo-2-fluoropyridine. The compound's reactivity can be studied using various analytical techniques, including NMR spectroscopy and mass spectrometry.
Cell Assay
Cellular assays are not commonly performed with 5-bromo-2-chloropyridine itself, as it is a chemical intermediate rather than a bioactive compound. However, the compounds synthesized using it, such as anti-inflammatory and antimicrobial agents, are typically evaluated in cell-based systems. For antimicrobial activity, derivatives are tested against bacterial and fungal cultures using standard broth microdilution methods to determine minimum inhibitory concentrations. For anti-inflammatory activity, cell lines such as macrophages are treated with derivatives, and cytokine levels are measured by ELISA. The compound itself is not used as a test article in cell-based experiments due to its primary role as a synthetic building block. Instead, it is used in the synthesis of drug candidates that are subsequently tested in cellular assays.
Animal Protocol
Animal studies are not typically conducted with 5-bromo-2-chloropyridine itself, as it is a synthetic intermediate. However, the pharmaceuticals synthesized using it, such as olanzapine, are evaluated in animal models for efficacy and safety. For example, olanzapine has been studied in rodent models of schizophrenia and bipolar disorder to assess its antipsychotic effects, pharmacokinetics, and toxicity. The compound's derivatives may also be evaluated in animal models of inflammation and infection. Toxicity and pharmacological profiles for the parent compound are generally inferred from related halogenated pyridine derivatives, as specific studies on the parent compound are not documented.
ADME/Pharmacokinetics
Pharmacokinetic data for 5-bromo-2-chloropyridine are not well characterized, as it is primarily a synthetic intermediate rather than a drug candidate. As a halogenated pyridine with a molecular weight of 192.44 g/mol, it is expected to have moderate lipophilicity and may be metabolized via cytochrome P450-mediated oxidative pathways. The presence of both bromine and chlorine atoms may influence its metabolic stability and clearance. However, comprehensive pharmacokinetic studies have not been performed, as the compound is not intended for therapeutic use. For research purposes, the compound is typically handled as a neat chemical and not administered to living organisms for pharmacokinetic profiling.
Toxicity/Toxicokinetics
Toxicological data for 5-bromo-2-chloropyridine are limited. The compound is classified with hazard statements indicating potential for skin and eye irritation. Standard safety precautions for handling halogenated heterocycles apply, including the use of personal protective equipment such as gloves and safety goggles. The compound should be handled in a well-ventilated area, and contact with skin and eyes should be avoided. In case of exposure, affected areas should be rinsed thoroughly with water. The compound is not classified as a carcinogen or mutagen based on available data, but comprehensive toxicological evaluation has not been performed. It should be stored at 0-8°C to maintain stability.
Additional Infomation
5-Bromo-2-chloropyridine is a research chemical, not an approved drug. It has no clinical trial or marketing approval status for therapeutic use. The compound is widely utilized in research focused on pharmaceutical development, particularly as an intermediate in the synthesis of anti-inflammatory and antimicrobial agents. It is also used in the formulation of agrochemicals, including herbicides and fungicides, and in the development of advanced materials such as polymers and coatings. In biochemical research, it is utilized in the study of biochemical pathways and interactions. In organic synthesis, it acts as a versatile building block for creating complex molecules efficiently. The compound is a key intermediate for the synthesis of olanzapine, an antipsychotic medication. It can be used in palladium-catalyzed amination and halogen-exchange reactions. The compound should be stored at 0-8°C and is supplied with a purity of ≥98%.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C5H3BRCLN
Molecular Weight
192.44
Exact Mass
190.913
CAS #
53939-30-3
PubChem CID
2734414
Appearance
White to light yellow solid powder
Density
1.7±0.1 g/cm3
Boiling Point
208.1±20.0 °C at 760 mmHg
Melting Point
65-69 °C(lit.)
Flash Point
79.7±21.8 °C
Vapour Pressure
0.3±0.4 mmHg at 25°C
Index of Refraction
1.581
LogP
2.36
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
1
Rotatable Bond Count
0
Heavy Atom Count
8
Complexity
78.8
Defined Atom Stereocenter Count
0
SMILES
BrC1=C([H])N=C(C([H])=C1[H])Cl
InChi Key
PEAOEIWYQVXZMB-UHFFFAOYSA-N
InChi Code
InChI=1S/C5H3BrClN/c6-4-1-2-5(7)8-3-4/h1-3H
Chemical Name
5-bromo-2-chloropyridine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.1964 mL 25.9821 mL 51.9642 mL
5 mM 1.0393 mL 5.1964 mL 10.3928 mL
10 mM 0.5196 mL 2.5982 mL 5.1964 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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