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Cyclopropylboronic acid

Cat No.:V68645 Purity: ≥98%
Cyclopropaneboronic acid is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
Cyclopropylboronic acid
Cyclopropylboronic acid Chemical Structure CAS No.: 411235-57-9
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
25g
50g
Other Sizes
Official Supplier of:
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Product Description
Cyclopropaneboronic acid is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
Cyclopropylboronic acid (CAS 411235-57-9) is a boronic acid with the molecular formula C3H7BO2 and a molecular weight of 85.9 g/mol. Its unique ring strain and compact structure make it valuable for introducing conformational constraints in medicinal chemistry and material science applications. Cyclopropylboronic acid is used as an intermediate to synthesize EGFR kinase inhibitors (Compound 25), which have antiproliferative effects on EGFR mutant (EGFR Δ19del/T790M/C797S) cells. It serves as a key building block in the development of bioactive molecules, agrochemicals, and pharmaceutical intermediates.
Biological Activity I Assay Protocols (From Reference)
Targets
Cyclopropylboronic acid does not have a specific biological target itself. It is a synthetic intermediate used to prepare bioactive molecules, including EGFR kinase inhibitors. Compound 25, synthesized from cyclopropylboronic acid, targets EGFR mutants (EGFR Δ19del/T790M/C797S) and exhibits antiproliferative effects. The cyclopropyl group is often used in drug design to increase activity, fix conformation, and improve pharmacokinetic properties and water solubility.
ln Vitro
Cyclopropylboronic acid is a chemical intermediate and does not possess intrinsic in vitro biological activity. Its value lies in its utility for synthesizing bioactive molecules, including EGFR kinase inhibitors. The compound is used to introduce cyclopropyl groups into drug candidates, which can enhance activity, fix conformation, and improve pharmacokinetic properties. It is not directly assayed for biological effects.
ln Vivo
This compound is not a pharmacologically active agent and does not have intrinsic in vivo activity. Its applications in vivo are limited to its use as a synthetic intermediate for producing drug candidates that are subsequently evaluated in animal models. EGFR kinase inhibitors synthesized from this intermediate may be evaluated in tumor-bearing mice for anticancer efficacy. The compound itself is not administered to animals as a test compound.
Enzyme Assay
Cyclopropylboronic acid is not typically used in cell-free enzyme/receptor binding assays. Its role in drug discovery is as a synthetic building block. For compounds synthesized using this reagent, typical binding assays may be performed. These involve incubating the test compound with purified enzymes or receptors in buffered solutions, with binding affinity measured by SPR, ITC, or fluorescence-based methods.
Cell Assay
Cell-based assays are not directly performed on cyclopropylboronic acid due to its lack of biological activity. However, drug candidates synthesized from this intermediate, such as EGFR kinase inhibitors, are tested in cellular systems. For EGFR inhibitors, cancer cell lines with EGFR mutations (e.g., NSCLC cells with Δ19del/T790M/C797S) are cultured and treated with the synthesized compound. Cell viability (MTT), apoptosis, and EGFR phosphorylation are assessed over 24–72 hours.
Animal Protocol
In vivo studies with cyclopropylboronic acid derivatives may involve administration to tumor-bearing mice via oral gavage or intravenous injection. For EGFR kinase inhibitors, tumor growth inhibition, survival, body weight, and pharmacokinetic parameters are monitored. Tissue distribution and toxicity are assessed by histopathology. All procedures follow institutional animal care guidelines.
ADME/Pharmacokinetics
Cyclopropylboronic acid is a synthetic chemical reagent and is not subject to pharmacokinetic evaluation as a drug. Its physicochemical properties include a molecular weight of 85.9 g/mol and a molecular formula of C3H7BO2. The compound is stable under normal storage conditions and is available in high purity (≥96%). The cyclopropyl group is valued in drug design for introducing conformational constraints and improving pharmacokinetic properties.
Toxicity/Toxicokinetics
The toxicological profile of cyclopropylboronic acid has not been extensively characterized. As a boronic acid, it may cause skin, eye, and respiratory tract irritation. Standard laboratory safety precautions should be observed, including the use of personal protective equipment (gloves, goggles, lab coat) and adequate ventilation. Ingestion or inhalation should be avoided. Appropriate first-aid measures should be in place.
Additional Infomation
Cyclopropylboronic acid is not a drug but a valuable chemical intermediate and building block for medicinal chemistry. It is used to synthesize EGFR kinase inhibitors with activity against mutant EGFR cells. The cyclopropyl group is often used in drug design to increase activity, fix conformation, and improve pharmacokinetic properties and water solubility. It serves as a key building block in the development of bioactive molecules, agrochemicals, and pharmaceutical intermediates. It is not approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C3H7BO2
Molecular Weight
85.90
Exact Mass
86.053
CAS #
411235-57-9
PubChem CID
2760897
Appearance
Off-white to yellow solid powder
Density
1.1±0.1 g/cm3
Boiling Point
205.1±23.0 °C at 760 mmHg
Melting Point
90-95 °C(lit.)
Flash Point
77.9±22.6 °C
Vapour Pressure
0.1±0.9 mmHg at 25°C
Index of Refraction
1.443
LogP
0.2
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
1
Heavy Atom Count
6
Complexity
50.8
Defined Atom Stereocenter Count
0
SMILES
O([H])B(C1([H])C([H])([H])C1([H])[H])O[H]
InChi Key
WLVKDFJTYKELLQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C3H7BO2/c5-4(6)3-1-2-3/h3,5-6H,1-2H2
Chemical Name
cyclopropylboronic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 11.6414 mL 58.2072 mL 116.4144 mL
5 mM 2.3283 mL 11.6414 mL 23.2829 mL
10 mM 1.1641 mL 5.8207 mL 11.6414 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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