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(R)-2-Amino-3-(3-nitrophenyl)propanoic acid (3-nitro-D-phenylalanine)

Cat No.:V68449 Purity: ≥98%
(R)-2-Amino-3-(3-nitrophenyl)propanoic acid is a phenylalanine analogue.
(R)-2-Amino-3-(3-nitrophenyl)propanoic acid (3-nitro-D-phenylalanine)
(R)-2-Amino-3-(3-nitrophenyl)propanoic acid (3-nitro-D-phenylalanine) Chemical Structure CAS No.: 169530-97-6
Product category: Amino Acid Derivatives
This product is for research use only, not for human use. We do not sell to patients.
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5g
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Product Description
(R)-2-Amino-3-(3-nitrophenyl)propanoic acid is a phenylalanine analogue.
(R)-2-Amino-3-(3-nitrophenyl)propanoic acid (3-nitro-D-phenylalanine, CAS 169530-97-6) is a non-proteinogenic D-amino acid derivative featuring a nitro-substituted phenyl ring at the side chain. It has a molecular weight of 210.19 g/mol (C₉H10N2O4). This compound is a D-enantiomer of 3-nitrophenylalanine. It is widely used as a building block in peptide synthesis to incorporate nitro-D-phenylalanine residues into peptides, enabling studies of chirality effects on biological activity, protease resistance, and receptor binding. The presence of the nitro group provides a handle for further chemical modifications (e.g., reduction to an amino group for fluorescent labeling). It is an aromatic nitro-compound substituted derivative and serves as an intriguing intermediate for medicinal chemistry.
Biological Activity I Assay Protocols (From Reference)
Targets
When incorporated into peptides, (R)-2-Amino-3-(3-nitrophenyl)propanoic acid can target a variety of receptors and enzymes depending on the peptide context. D-amino acids in peptides confer resistance to proteases, potentially increasing half-life. The nitro group can act as an electron-withdrawing group, modulating pi-pi interactions with aromatic residues in binding pockets. Specific targets include neuropeptide receptors (opioid, cholecystokinin), integrins, and enzymes (proteases, kinases). The free amino acid itself has no defined target. It is classified as a Phenylalanine derivative.
ln Vitro
Commercial ergot supplements have been made from amino acids and their derivatives. They affect the release of anabolic hormones, the availability of fuel for activity, the ability to think clearly under pressure, and the prevention of muscular damage brought on by exertion. They are regarded as advantageous synergistic food ingredients [1].
The free amino acid has no reported in vitro biological activity. When incorporated into peptides, D-3-nitrophenylalanine residues can enhance the potency and stability of therapeutic peptides. For example, D-Phe-containing opioid peptides show increased micro-opioid receptor binding and resistance to degradation. No IC50 or EC50 data for the free amino acid are available.
ln Vivo
No in vivo activity data are available for the free amino acid. Peptides containing D-3-nitrophenylalanine may be evaluated in animal models of pain, cancer, or metabolic disease. For instance, D-Phe-containing peptides administered intraperitoneally (10-30 mg/kg) in mice show prolonged analgesia in tail-flick tests compared to L-Phe analogs. No data exist for the building block alone.
Enzyme Assay
The compound is not used directly in enzyme binding assays. For chemical characterization, standard HPLC with a C18 column and UV detection (210 nm and 260 nm for nitro group) is used. NMR in DMSO-d₆ or D2O confirms structure. For chiral purity, chiral HPLC with a Chiralpak column (e.g., AD-H) is used. Solubility: soluble in DMSO, slightly soluble in water. No biological binding protocols.
Cell Assay
No cell-based protocols are established for this free amino acid. For peptide synthesis containing this residue: In SPPS, Fmoc-D-3-nitrophenylalanine (commercially available) is coupled using HATU/DIEA in DMF. After peptide assembly, the peptide is cleaved from resin with TFA/TIS/H2O. The final peptide is purified by HPLC and characterized by MS. The free amino acid is not used in cell assays.
Animal Protocol
No animal studies have been conducted with the free amino acid. For D-3-nitrophenylalanine-containing peptides, typical in vivo studies: mice (C57BL/6, 8 weeks) are injected intraperitoneally with peptide (1-20 mg/kg). Blood is collected at 0, 1, 2, 4, 8, 24 hours. Plasma peptide concentration is measured by LC-MS/MS to calculate half-life and AUC. Efficacy in disease models (e.g., xenograft) can also be evaluated. No data for the building block.
ADME/Pharmacokinetics
No PK data are available for (R)-2-Amino-3-(3-nitrophenyl)propanoic acid. It is not a drug candidate. As a D-amino acid, it may be slowly metabolized by D-amino acid oxidase (DAO) in the kidney and liver, producing 3-nitrophenylpyruvic acid and ammonia. Oral bioavailability is likely low due to intestinal transport preference for L-amino acids. Solubility: low in water; soluble in DMSO. No ADME studies reported.
Toxicity/Toxicokinetics
Safety: The nitro group may contribute to potential mutagenicity (nitroaromatics can be genotoxic after metabolic reduction). Handle with caution. May cause skin and eye irritation. Harmful if swallowed. Not classified as carcinogen. Use standard PPE: gloves, lab coat, safety goggles, fume hood. Avoid inhalation of dust. Store at -20degC, desiccated, protected from light.
References
[1]. Luckose F, et al. Effects of amino acid derivatives on physical, mental, and physiological activities. Crit Rev Food Sci Nutr. 2015;55(13):1793-980.
Additional Infomation
(R)-2-Amino-3-(3-nitrophenyl)propanoic acid is not an approved drug and has no clinical trial history. It is a research chemical for peptide synthesis and medicinal chemistry. D-Phenylalanine derivatives are used to create protease-resistant, metabolically stable therapeutic peptides. The 3-nitro-D-phenylalanine residue can also be reduced to 3-amino-D-phenylalanine (via hydrogenation with Pd/C or SnCl2/HCl), providing a reactive primary amine for further conjugation (e.g., to fluorescent dyes, PEG, or targeting ligands). This makes it a versatile intermediate for peptide-drug conjugates (PDCs) and chemical biology probes. Commercially available for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H10N2O4
Molecular Weight
210.19
Exact Mass
210.064
CAS #
169530-97-6
PubChem CID
7000156
Appearance
Light brown to brown solid powder
Density
1.4±0.1 g/cm3
Boiling Point
410.8±35.0 °C at 760 mmHg
Flash Point
202.3±25.9 °C
Vapour Pressure
0.0±1.0 mmHg at 25°C
Index of Refraction
1.614
LogP
0.84
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
15
Complexity
251
Defined Atom Stereocenter Count
1
SMILES
O([H])C([C@@]([H])(C([H])([H])C1C([H])=C([H])C([H])=C(C=1[H])[N+](=O)[O-])N([H])[H])=O
InChi Key
YTHDRUZHNYKZGF-MRVPVSSYSA-N
InChi Code
InChI=1S/C9H10N2O4/c10-8(9(12)13)5-6-2-1-3-7(4-6)11(14)15/h1-4,8H,5,10H2,(H,12,13)/t8-/m1/s1
Chemical Name
(2R)-2-amino-3-(3-nitrophenyl)propanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.7576 mL 23.7880 mL 47.5760 mL
5 mM 0.9515 mL 4.7576 mL 9.5152 mL
10 mM 0.4758 mL 2.3788 mL 4.7576 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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