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N-Carbobenzyloxy--amino-L-alanine

N-Carbobenzyloxy--amino-L-alanine is an alanine analogue.
N-Carbobenzyloxy--amino-L-alanine
N-Carbobenzyloxy--amino-L-alanine Chemical Structure CAS No.: 35761-26-3
Product category: Amino Acid Derivatives
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100g
Other Sizes
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Product Description
N-Carbobenzyloxy--amino-L-alanine is an alanine analogue.
N-Carbobenzyloxy-β-amino-L-alanine (CAS 35761-26-3), also known as Z-β-amino-L-alanine or Nα-Cbz-β-amino-L-alanine, is a protected derivative of the non-proteinogenic amino acid β-amino-L-alanine (also known as L-2,3-diaminopropionic acid, DAP). With a molecular formula of C₁₁H₁₄N₂O₄ and a molecular weight of 238.24 g/mol, it appears as a white to off-white solid powder. This compound features a benzyloxycarbonyl (Z or Cbz) protecting group attached to the α-amino group, while the β-amino group remains free for subsequent coupling reactions. The Z group is cleavable under mild hydrogenolysis conditions (H₂/Pd-C) or by treatment with HBr in acetic acid. N-Carbobenzyloxy-β-amino-L-alanine is a key building block for the synthesis of peptides containing diaminopropionic acid (DAP) residues, which are valuable for studying protein structure, enzyme mechanisms, and for developing peptide-based therapeutics. DAP is a naturally occurring amino acid found in certain antibiotics and is used as a scaffold for creating conformationally constrained peptides. The compound is intended for research use only and is typically stored as a powder at -20°C for up to 3 years or at 4°C for up to 2 years.
Biological Activity I Assay Protocols (From Reference)
Targets
As a synthetic intermediate, N-Carbobenzyloxy-β-amino-L-alanine functions as a chemical tool rather than a pharmacologically active drug; thus, its "target" is the peptide bond formation process in synthetic chemistry. The compound itself does not target specific biological receptors or enzymes in the classical pharmacological sense. Instead, it serves as a protected diaminopropionic acid derivative for incorporation into peptide chains via selective deprotection and coupling reactions. The Z protecting group on the α-amino group provides orthogonal protection, allowing for selective coupling at the β-amino position. DAP residues in peptides can act as metal chelators, hydrogen bond donors/acceptors, or as sites for post-synthetic modifications. The compound's utility lies in enabling the synthesis of complex peptide sequences where the presence of a free β-amino group is required for biological activity or for further derivatization.
ln Vitro
Commercial ergot supplements have been made from amino acids and their derivatives. They affect the release of anabolic hormones, the availability of fuel for activity, the ability to think clearly under pressure, and the prevention of muscular damage brought on by exertion. They are regarded as advantageous synergistic food ingredients [1].
The in vitro activity of N-Carbobenzyloxy-β-amino-L-alanine is evaluated primarily through its performance in peptide coupling reactions rather than biological assays. In standard peptide synthesis, the compound demonstrates high coupling efficiency when used as a protected amino acid building block. The Z-protecting group provides stability under standard peptide coupling conditions and can be removed by hydrogenolysis. Quality control assessments include HPLC purity analysis (≥98%) and characterization by NMR and mass spectrometry. The compound's LogP is 1.46, indicating moderate lipophilicity. The compound shows no intrinsic biological activity in cell-free systems as it is strictly a synthetic intermediate. Amino acids and amino acid derivatives have been commercially used as ergogenic supplements, influencing the release of anabolic hormones and fuel availability during activity.
ln Vivo
In vivo activity is not applicable to N-Carbobenzyloxy-β-amino-L-alanine as this compound is not intended for administration to living organisms. It is exclusively a research chemical and synthetic intermediate used in laboratory settings for peptide preparation. The compound is not designed for therapeutic or diagnostic purposes in animal models. Any biological activity that might be observed would be a result of metabolic conversion following deprotection, but such studies are not typically conducted with this protected amino acid derivative. Its utility lies entirely in the chemical synthesis domain rather than in pharmacological evaluation. The compound is stored and handled under standard laboratory conditions for chemical synthesis. No established animal models or in vivo efficacy studies exist for this compound.
Enzyme Assay
The in vitro enzyme/receptor binding (non-cellular) experimental workflow for N-Carbobenzyloxy-β-amino-L-alanine involves standard peptide synthesis and characterization procedures. A typical workflow: dissolve the compound (1.0 equivalent) in an appropriate solvent such as DMF or DCM, activate the carboxylic acid using standard coupling reagents such as HATU or DCC along with a base (e.g., DIEA), then add the amine component. The reaction mixture is stirred at room temperature for 1-4 hours, and progress is monitored by TLC. After completion, the product is isolated by extraction and purified by column chromatography or recrystallization. Characterization includes ¹H-NMR, ¹³C-NMR, and mass spectrometry to confirm structure. HPLC purity (≥98%) is used for quality control. The compound has a density of 1.3±0.1 g/cm³ and a boiling point of 463.8±45.0 °C.
Cell Assay
In vitro cell-based experimental workflows are not typically performed with N-Carbobenzyloxy-β-amino-L-alanine, as the compound is not intended for biological activity screening. However, when used as a precursor in peptide synthesis, the resulting deprotected peptides containing DAP residues may be subjected to cell-based assays. In such cases, the compound would first be deprotected to liberate the free DAP-containing peptide, and the final peptide product would be tested in appropriate cell lines. Typical assays might include cell viability (MTT assay), apoptosis detection (Annexin V staining), or receptor binding studies depending on the biological target of the synthesized peptide. Cells are typically cultured in DMEM with 10% FBS, treated with peptide concentrations ranging from 0.1 to 100 µM for 24-72 hours, and read by plate reader or flow cytometry. The protected amino acid derivative itself is not directly tested in these systems.
Animal Protocol
In vivo animal experimental workflows are not applicable to N-Carbobenzyloxy-β-amino-L-alanine. This compound is exclusively a synthetic intermediate and research chemical, not a drug candidate intended for animal testing. There are no established animal models or in vivo protocols associated with this protected amino acid derivative. Any in vivo studies would involve the final deprotected peptide products rather than the protected intermediate itself. The compound is stored and handled under standard laboratory conditions for chemical synthesis, protected from light. The compound is stable at ambient temperature for a few days during ordinary shipping.
ADME/Pharmacokinetics
The pharmacokinetic properties of N-Carbobenzyloxy-β-amino-L-alanine have not been characterized, as the compound is not intended for pharmaceutical use. Being a protected amino acid derivative with a molecular weight of 238.24 g/mol and LogP of 1.46, it would be expected to have moderate lipophilicity if it were administered. However, the Z-protecting group would likely be cleaved metabolically, and any pharmacokinetic data would pertain to the liberated β-amino-L-alanine rather than the parent compound. The compound is stable under recommended storage conditions (powder at -20°C for 3 years, 4°C for 2 years; in solvent at -80°C for 6 months or -20°C for 1 month) and is not designed for systemic exposure in living organisms. No data on absorption, distribution, metabolism, or excretion are available for the protected form.
Toxicity/Toxicokinetics
The toxicological data for N-Carbobenzyloxy-β-amino-L-alanine are limited as it is not a pharmaceutical agent. Standard safety precautions apply when handling this chemical: it may cause skin and eye irritation, and inhalation of dust should be avoided. The compound should be handled in a fume hood with appropriate personal protective equipment including gloves, safety glasses, and laboratory coat. No chronic toxicity, carcinogenicity, or reproductive toxicity studies have been conducted, as these are not relevant for a synthetic intermediate. The compound is intended for research use only and is not approved for human or veterinary applications. It is not classified as a hazardous substance under most regulatory frameworks, but standard laboratory chemical safety practices should be followed.
References
[1]. Luckose F, et al. Effects of amino acid derivatives on physical, mental, and physiological activities. Crit Rev Food Sci Nutr. 2015;55(13):1793-1032.
Additional Infomation
N-Carbobenzyloxy-β-amino-L-alanine is a well-established reagent in peptide chemistry, serving as a key building block for the synthesis of peptides containing diaminopropionic acid (DAP) residues. DAP is a non-proteinogenic amino acid found in certain antibiotics and is used as a scaffold for creating conformationally constrained peptides. The compound is a alanine analogue and is commercially available with purity ≥98%. It is not a drug and has not undergone clinical trials or received regulatory approval. The compound is for research use only. The Z protecting group was first introduced by Bergmann and Zervas in 1932 and remains one of the most widely used amino protecting groups in organic synthesis. The compound is available in various pack sizes for research applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H14N2O4
Molecular Weight
238.24
Exact Mass
238.095
CAS #
35761-26-3
PubChem CID
2756313
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
463.8±45.0 °C at 760 mmHg
Melting Point
240ºC (dec.)
Flash Point
234.3±28.7 °C
Vapour Pressure
0.0±1.2 mmHg at 25°C
Index of Refraction
1.572
LogP
1.46
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
6
Heavy Atom Count
17
Complexity
264
Defined Atom Stereocenter Count
1
SMILES
C1=CC=C(C=C1)COC(=O)N[C@@H](CN)C(=O)O
InChi Key
FOXRXVSTFGNURG-VIFPVBQESA-N
InChi Code
InChI=1S/C11H14N2O4/c12-6-9(10(14)15)13-11(16)17-7-8-4-2-1-3-5-8/h1-5,9H,6-7,12H2,(H,13,16)(H,14,15)/t9-/m0/s1
Chemical Name
(2S)-3-amino-2-(phenylmethoxycarbonylamino)propanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.1974 mL 20.9872 mL 41.9745 mL
5 mM 0.8395 mL 4.1974 mL 8.3949 mL
10 mM 0.4197 mL 2.0987 mL 4.1974 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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