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exo-BCN-NHS carbonate

Cat No.:V67077 Purity: ≥98%
exo-BCN-NHS carbonate contains a BCN group, which could undergo strain-promoted alkyne-azide cycloaddition reaction (SPAAC) with compounds bearing Azide groups.
exo-BCN-NHS carbonate
exo-BCN-NHS carbonate Chemical Structure CAS No.: 1493802-77-9
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
exo-BCN-NHS carbonate contains a BCN group, which could undergo strain-promoted alkyne-azide cycloaddition reaction (SPAAC) with compounds bearing Azide groups.
exo-BCN-NHS carbonate (CAS#: 1493802-77-9) is a click chemistry reagent containing a BCN (bicyclo[6.1.0]non-4-yne) group that can undergo strain-promoted alkyne-azide cycloaddition (SPAAC) reactions with compounds bearing azide groups. It has the molecular formula C₁₅H₁₇NO₅ and a molecular weight of 291.30 g/mol. The compound is ideal for constructing stable bioconjugates, antibody-drug conjugates (ADCs), or functionalized surfaces in biopharmaceutical, diagnostic, and imaging applications, offering high specificity, fast kinetics, and minimal perturbation of biological systems. It appears as a solid and is intended for click chemistry applications.
Biological Activity I Assay Protocols (From Reference)
Targets
exo-BCN-NHS carbonate targets azide-functionalized molecules through the BCN group, which undergoes strain-promoted alkyne-azide cycloaddition (SPAAC) reactions. The NHS carbonate group targets primary amines (-NH₂) on proteins, antibodies, and other biomolecules. The compound does not target a specific protein or enzyme but rather serves as a bifunctional linker that connects azide-containing molecules to amine-containing molecules. The BCN group enables copper-free click chemistry, which is bioorthogonal and compatible with biological systems.
ln Vitro
The in vitro activity of exo-BCN-NHS carbonate is its function as a click chemistry reagent for bioconjugation. The BCN group undergoes strain-promoted alkyne-azide cycloaddition (SPAAC) with azide-containing molecules. The NHS carbonate group reacts with primary amines to form stable carbamate linkages. This enables the creation of stable bioconjugates, antibody-drug conjugates (ADCs), and functionalized surfaces. The reaction offers high specificity, fast kinetics, and minimal perturbation of biological systems. The compound is used in biopharmaceutical, diagnostic, and imaging applications.
ln Vivo
exo-BCN-NHS carbonate is not used as a therapeutic agent. Its in vivo utility is limited to research applications involving the preparation of bioconjugates for imaging, drug delivery, and diagnostic development. The compound is not intended for systemic therapeutic use.
Enzyme Assay
In vitro conjugation assays for exo-BCN-NHS carbonate involve incubating the NHS carbonate with amine-containing biomolecules in appropriate buffer conditions (typically pH 7-9) to form stable carbamate linkages. The BCN-functionalized product is then reacted with azide-containing molecules via SPAAC click chemistry. The reaction is copper-free and proceeds rapidly under physiological conditions. The formation of the conjugate can be confirmed by SDS-PAGE, mass spectrometry, or other analytical methods.
Cell Assay
For in vitro cellular experiments, exo-BCN-NHS carbonate is used to prepare bioconjugates that are then added to cell culture medium for incubation with target cells. For example, a protein conjugated to a fluorescent dye or drug via this linker could be used to study cellular uptake, localization, or function. The bioorthogonal nature of the SPAAC reaction ensures minimal interference with cellular processes.
Animal Protocol
In vivo animal experiments with exo-BCN-NHS carbonate are not typically performed with the compound itself. However, bioconjugates prepared using this linker can be administered to animal models for studying drug delivery, imaging, or protein function in vivo. The SPAAC reaction is compatible with in vivo applications due to its bioorthogonality and fast kinetics.
ADME/Pharmacokinetics
Pharmacokinetic properties of exo-BCN-NHS carbonate have not been characterized, as the compound is a research-use click chemistry reagent rather than a drug candidate. The compound has a molecular weight of 291.30 g/mol and should be stored under appropriate conditions.
Toxicity/Toxicokinetics
The compound is intended for research use only and not for human therapeutic or diagnostic applications. Standard laboratory safety precautions should be observed when handling this chemical reagent.
Additional Infomation
exo-BCN-NHS carbonate (CAS#: 1493802-77-9) is a click chemistry reagent containing a BCN group for SPAAC reactions with azide-containing compounds. It is ideal for constructing stable bioconjugates, ADCs, or functionalized surfaces in biopharmaceutical, diagnostic, and imaging applications. The compound has no clinical or therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H17NO5
Molecular Weight
291.30
Exact Mass
291.11
CAS #
1493802-77-9
PubChem CID
75412386
Appearance
White to off-white solid powder
Density
1.35±0.1 g/cm3(Predicted)
Boiling Point
412.8±28.0 °C(Predicted)
LogP
2
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
5
Heavy Atom Count
21
Complexity
509
Defined Atom Stereocenter Count
2
SMILES
O(C(=O)ON1C(CCC1=O)=O)CC1[C@@H]2CCC#CCC[C@@H]21
InChi Key
SKTDJYHCSCYLQU-FOSCPWQOSA-N
InChi Code
InChI=1S/C15H17NO5/c17-13-7-8-14(18)16(13)21-15(19)20-9-12-10-5-3-1-2-4-6-11(10)12/h10-12H,3-9H2/t10-,11+,12?
Chemical Name
[(1S,8R)-9-bicyclo[6.1.0]non-4-ynyl]methyl (2,5-dioxopyrrolidin-1-yl) carbonate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4329 mL 17.1644 mL 34.3289 mL
5 mM 0.6866 mL 3.4329 mL 6.8658 mL
10 mM 0.3433 mL 1.7164 mL 3.4329 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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