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Methyl 12-aminododecanoate hydrochloride

Cat No.:V67039 Purity: ≥98%
Methyl 12-aminododecanoate HCl is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
Methyl 12-aminododecanoate hydrochloride
Methyl 12-aminododecanoate hydrochloride Chemical Structure CAS No.: 4271-86-7
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1g
5g
Other Sizes
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Product Description
Methyl 12-aminododecanoate HCl is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
Methyl 12-aminododecanoate hydrochloride (CAS#: 4271-86-7) is a biochemical reagent with the molecular formula C₁₃H₂₈ClNO₂ and a molecular weight of 265.82 g/mol. It appears as a solid and is classified as a PROTAC linker compound. This compound is a derivative of 12-aminododecanoic acid where the carboxylic acid is esterified with methanol and the amine is protonated as the hydrochloride salt. The structure features a long aliphatic chain with a terminal amine and a methyl ester, providing amphiphilic properties that make it valuable in various biomedical and chemical applications. The compound is typically supplied at ≥95% purity and should be stored as a powder at -20°C, protected from direct sunlight. For solution storage, it can be maintained at -80°C for up to one year. It is shipped with blue ice or at ambient temperature. As a laboratory reagent, it is intended for research use only and not for human therapeutic or diagnostic applications.
Biological Activity I Assay Protocols (From Reference)
Targets
Methyl 12-aminododecanoate hydrochloride does not target a specific protein or enzyme in biological systems. As a PROTAC linker compound, its utility lies in its chemical structure rather than pharmacological target engagement. The terminal amine group provides a reactive handle for conjugation to other molecules, while the long hydrophobic alkyl chain can serve as a spacer in bifunctional molecules such as PROTACs (Proteolysis-Targeting Chimeras). The hydrochloride salt form enhances water solubility, facilitating its use in aqueous biochemical reactions. The compound may interact with biological membranes due to its amphiphilic nature, but this is not a specific receptor-mediated interaction.
ln Vitro
The in vitro activity of Methyl 12-aminododecanoate hydrochloride is primarily related to its function as a chemical reagent rather than a pharmacologically active compound. As a sulfonylation reagent for organic synthesis and drug discovery, it participates in chemical reactions where the amine group can be modified or used to form amide bonds. The compound can be utilized as a biomaterial for life science related research. Its long alkyl chain makes it suitable for studies involving membrane interactions, lipid modification, or as a building block for more complex molecules. No specific pharmacological in vitro activities such as enzyme inhibition or receptor modulation have been reported for this compound.
ln Vivo
No significant in vivo activity has been reported for Methyl 12-aminododecanoate hydrochloride, as the compound is primarily utilized as a biochemical reagent and chemical intermediate rather than a pharmacologically active agent. The compound is not intended for therapeutic use in living organisms. Any in vivo effects would be related to its properties as a chemical reagent rather than specific biological activities. The compound's long-chain fatty acid ester structure might interact with lipid metabolism pathways if administered systemically, but such studies have not been reported.
Enzyme Assay
In vitro enzyme/receptor binding assays are not typically performed for Methyl 12-aminododecanoate hydrochloride, as it functions as a chemical reagent rather than a drug candidate targeting specific enzymes or receptors. The compound is used in organic synthesis and drug discovery as a building block. If binding studies were to be conducted, they would likely involve assessing the compound's interaction with biological membranes or its incorporation into lipid structures rather than specific receptor binding. Standard assay protocols would involve dissolving the compound in appropriate solvents and incubating with target molecules or membranes.
Cell Assay
For in vitro cellular experiments, Methyl 12-aminododecanoate hydrochloride is dissolved in DMSO or other suitable solvents and diluted in cell culture medium. The compound may be used to study the effects of fatty acid derivatives on cellular processes or as a precursor for synthesizing bioactive molecules. As a PROTAC linker, it can be incorporated into larger molecules that are then tested in cellular assays. Standard cell viability, proliferation, or uptake studies could be performed, but specific protocols are not well-documented in the literature for this compound.
Animal Protocol
In vivo animal experiments with Methyl 12-aminododecanoate hydrochloride are not commonly performed, as the compound is primarily a research reagent rather than a therapeutic candidate. The compound is not intended for administration to living organisms. If used in animal studies, it would most likely be as a synthetic intermediate for preparing other compounds that are subsequently tested in vivo, rather than being administered directly.
ADME/Pharmacokinetics
Pharmacokinetic properties of Methyl 12-aminododecanoate hydrochloride have not been characterized, as the compound is a research-use chemical reagent rather than a drug candidate. The compound has a molecular weight of 265.82 g/mol and is soluble in organic solvents. As a fatty acid ester derivative, if absorbed, it would likely be metabolized by esterases and undergo fatty acid oxidation pathways. However, no specific PK data including half-life, clearance, volume of distribution, or bioavailability has been reported for this compound.
Toxicity/Toxicokinetics
The compound has a molecular weight of 265.82 and a molecular formula of C₁₃H₂₈ClNO₂. Toxicological data for Methyl 12-aminododecanoate hydrochloride has not been systematically evaluated, as the compound is intended for research applications only and not for therapeutic use. Standard laboratory safety precautions should be observed when handling this chemical reagent, including the use of appropriate personal protective equipment and working in a well-ventilated area. The compound should be stored away from direct sunlight.
Additional Infomation
Methyl 12-aminododecanoate hydrochloride (CAS# 4271-86-7) is a biochemical compound that can be utilized as a biomaterial or organic/chemical reagent for biomedical research. It is classified as a PROTAC linker compound, indicating its utility in the synthesis of proteolysis-targeting chimeras for targeted protein degradation. The compound can also serve as a sulfonylation reagent for organic synthesis and drug discovery. It is intended for laboratory use only and has no clinical or therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C13H28CLNO2
Molecular Weight
265.82
Exact Mass
265.181
CAS #
4271-86-7
PubChem CID
19372000
Appearance
White to off-white solid powder
LogP
4.521
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
12
Heavy Atom Count
17
Complexity
160
Defined Atom Stereocenter Count
0
SMILES
COC(=O)CCCCCCCCCCCN.Cl
InChi Key
UZAPWACCYWKXEL-UHFFFAOYSA-N
InChi Code
InChI=1S/C13H27NO2.ClH/c1-16-13(15)11-9-7-5-3-2-4-6-8-10-12-14;/h2-12,14H2,1H3;1H
Chemical Name
methyl 12-aminododecanoate;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.7619 mL 18.8097 mL 37.6194 mL
5 mM 0.7524 mL 3.7619 mL 7.5239 mL
10 mM 0.3762 mL 1.8810 mL 3.7619 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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