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Fmoc-L-Ser((Ac)4-β-D-Glc)-OH

Cat No.:V66741 Purity: ≥98%
Fmoc-L-Ser((Ac)4-β-D-Glc)-OH is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
Fmoc-L-Ser((Ac)4-β-D-Glc)-OH
Fmoc-L-Ser((Ac)4-β-D-Glc)-OH Chemical Structure CAS No.: 118358-38-6
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
Fmoc-L-Ser((Ac)4-β-D-Glc)-OH is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
Fmoc-L-Ser((Ac)4-β-D-Glc)-OH is a glycosylated amino acid derivative with the molecular formula C32H35NO14 and a molecular weight of 657.62 g/mol. It is an Fmoc-protected L-serine building block carrying a tetra-acetylated β-D-glucose residue, designed for solid-phase peptide synthesis (SPPS) of glycopeptides. The compound features an Nα-Fmoc protecting group for amine protection and a free α-carboxylic acid for coupling to resin-bound peptides. It serves as a crucial tool in glycobiology research for synthesizing glycopeptides and glycoproteins that mimic natural glycosylated proteins. The acetyl groups protect the sugar hydroxyls during peptide synthesis and are removed after peptide assembly.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of Fmoc-L-Ser((Ac)4-β-D-Glc)-OH is the growing peptide chain during solid-phase peptide synthesis, where it serves as a glycosylated amino acid building block. The compound is designed to incorporate O-glycosylated serine residues into synthetic peptides, enabling the study of glycoprotein structure and function. It does not target a specific biological receptor but rather serves as a tool for chemical biology research. The acetyl-protected glucose moiety allows for the synthesis of glycopeptides that can be deprotected to yield native O-glycosylated serine residues for biological studies.
ln Vitro
In vitro activity of this compound is assessed in the context of peptide synthesis rather than biological activity. The compound's reactivity is characterized by its ability to couple to resin-bound peptides under standard Fmoc-SPPS conditions. The coupling efficiency is monitored by the Kaiser test or other colorimetric assays. After deprotection of the acetyl groups, the resulting glycopeptide can be evaluated for its biological activity, such as binding to lectins or antibodies. The compound's utility lies in its ability to produce well-defined glycopeptides for studying protein glycosylation.
ln Vivo
In vivo biological activity is not applicable for this compound, as it is a synthetic intermediate used in peptide synthesis rather than a therapeutic agent. Its applications are confined to laboratory research in glycobiology and peptide chemistry. No in vivo efficacy or pharmacological studies in animal models are available, as the compound is not designed for systemic administration. The resulting glycopeptides may have biological activities, but the building block itself is not intended for in vivo use.
Enzyme Assay
Non-cellular experiments for this compound typically involve solid-phase peptide synthesis protocols. A typical procedure includes dissolving the Fmoc-protected amino acid in DMF with HBTU or HATU as the coupling reagent and DIEA as the base. The activated amino acid is then coupled to the resin-bound peptide for 1-2 hours. The coupling efficiency is monitored by the Kaiser test. After peptide assembly, the Fmoc group is removed with piperidine, and the acetyl groups are deprotected with hydrazine or sodium methoxide to yield the free glycopeptide.
Cell Assay
In vitro cell-based experiments are not typically performed with this compound, as it is a synthetic building block rather than a biological testing agent. However, the glycopeptides synthesized using this compound can be tested in cell-based assays to study their biological activities. For example, glycopeptides may be evaluated for their ability to bind to cell surface receptors or modulate immune responses. The compound itself is not tested in cell culture models for pharmacological activity.
Animal Protocol
In vivo animal studies are not performed with this compound in a therapeutic context. Its applications are confined to chemical synthesis and laboratory research. No efficacy or safety studies in animal models are available, as the compound is not intended for human or veterinary use. The glycopeptides synthesized using this compound may be tested in animals for their biological effects, but the building block itself is not administered directly.
ADME/Pharmacokinetics
Pharmacokinetic properties are not characterized for this compound, as it is a synthetic intermediate rather than a therapeutic agent. Its molecular weight is 657.62 g/mol, and it is soluble in organic solvents such as DMF and DCM. The compound is stable under dry conditions and should be stored at -20°C for long-term stability. No data on absorption, distribution, metabolism, or excretion are available, as these parameters are not relevant for a peptide synthesis building block.
Toxicity/Toxicokinetics
Toxicological data for this compound are limited. It should be handled with appropriate safety precautions, as it may be irritating to skin, eyes, and respiratory tract. The compound is stable under recommended storage conditions. No carcinogenic or reproductive toxicity data are available. Researchers should consult the safety data sheet for specific hazard information and handling guidelines. The compound is not intended for human use.
Additional Infomation
Fmoc-L-Ser((Ac)4-β-D-Glc)-OH is a glycosylated amino acid building block for solid-phase peptide synthesis. Its CAS number is 118358-38-6. The compound is used in glycobiology research for the synthesis of glycopeptides and glycoproteins. It is available with a purity of ≥98% from various suppliers. The compound is not approved for therapeutic use but is an essential tool for studying protein glycosylation and developing glycosylated therapeutics. It should be stored desiccated at -20°C to prevent degradation.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C32H35NO14
Molecular Weight
657.62
Exact Mass
657.205
CAS #
118358-38-6
PubChem CID
11125183
Appearance
White to off-white solid powder
Density
1.4±0.1 g/cm3
Boiling Point
775.0±60.0 °C at 760 mmHg
Flash Point
422.5±32.9 °C
Vapour Pressure
0.0±2.8 mmHg at 25°C
Index of Refraction
1.590
LogP
5.46
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
14
Rotatable Bond Count
17
Heavy Atom Count
47
Complexity
1140
Defined Atom Stereocenter Count
6
SMILES
CC(=O)OC[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OC[C@@H](C(=O)O)NC(=O)OCC2C3=CC=CC=C3C4=CC=CC=C24)OC(=O)C)OC(=O)C)OC(=O)C
InChi Key
UGQPZVSWEMKXBN-UKFUGAQESA-N
InChi Code
InChI=1S/C32H35NO14/c1-16(34)41-15-26-27(44-17(2)35)28(45-18(3)36)29(46-19(4)37)31(47-26)42-14-25(30(38)39)33-32(40)43-13-24-22-11-7-5-9-20(22)21-10-6-8-12-23(21)24/h5-12,24-29,31H,13-15H2,1-4H3,(H,33,40)(H,38,39)/t25-,26+,27+,28-,29+,31+/m0/s1
Chemical Name
(2S)-2-(9H-fluoren-9-ylmethoxycarbonylamino)-3-[(2R,3R,4S,5R,6R)-3,4,5-triacetyloxy-6-(acetyloxymethyl)oxan-2-yl]oxypropanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.5206 mL 7.6032 mL 15.2064 mL
5 mM 0.3041 mL 1.5206 mL 3.0413 mL
10 mM 0.1521 mL 0.7603 mL 1.5206 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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