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5-Methylpyrazine-2-carboxylic acid

Cat No.:V66151 Purity: ≥98%
5-Methylpyrazine-2-carboxylic acid is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
5-Methylpyrazine-2-carboxylic acid
5-Methylpyrazine-2-carboxylic acid Chemical Structure CAS No.: 5521-55-1
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
5-Methylpyrazine-2-carboxylic acid is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
5-Methylpyrazine-2-carboxylic acid (CAS 5521-55-1), also known as 5-methyl-2-pyrazinecarboxylic acid or 2-methylpyrazine-5-carboxylic acid, is a pyrazine derivative with molecular formula C6H6N2O2 and molecular weight 138.12. It features a pyrazine ring with a carboxylic acid group at the 2-position and a methyl group at the 5-position. This compound is an important pharmaceutical intermediate used in the preparation of antidiabetic drugs such as glipizide and lipid-lowering agents such as acipimox. Its derivatives are also used in antituberculosis medications.
Biological Activity I Assay Protocols (From Reference)
Targets
5-Methylpyrazine-2-carboxylic acid does not have a direct pharmacological target as it is a synthetic intermediate rather than a drug. However, its derivatives and analogs may target enzymes involved in glucose metabolism (for glipizide, which targets ATP-sensitive potassium channels in pancreatic beta cells) or lipid metabolism (for acipimox, which acts as a nicotinic acid receptor agonist). The compound serves as a key building block for the synthesis of these therapeutic agents.
ln Vitro
As a pharmaceutical intermediate, 5-methylpyrazine-2-carboxylic acid is not typically evaluated for direct in vitro pharmacological activity. Its biological relevance comes from its conversion to active pharmaceutical ingredients such as glipizide and acipimox. In research settings, the compound may be tested for its chemical reactivity and suitability as a precursor for drug synthesis rather than for direct biological activity in cell-based assays.
ln Vivo
No specific in vivo pharmacological activity data are available for 5-methylpyrazine-2-carboxylic acid itself, as it is a synthetic intermediate rather than a therapeutic agent. The compound is used in the industrial synthesis of drugs that have established in vivo activities: glipizide for type 2 diabetes and acipimox for hyperlipidemia. Its methyl ester derivative is also used in tuberculosis treatment. The compound is not administered directly to animals for pharmacological evaluation.
Enzyme Assay
For non-cellular assays, 5-methylpyrazine-2-carboxylic acid can be characterized by standard analytical techniques including HPLC, NMR, and mass spectrometry to confirm identity and purity. The compound can be evaluated as a substrate or product in enzymatic reactions involving pyrazine-metabolizing enzymes. Typical protocols involve dissolving the compound in appropriate buffers and analyzing reaction mixtures by chromatographic methods. The compound has an XLogP of 0.4 and one rotatable bond.
Cell Assay
For in vitro cell-based studies, 5-methylpyrazine-2-carboxylic acid is not typically used as a direct test compound due to its role as a synthetic intermediate. If evaluated, it would be dissolved in DMSO or aqueous buffer and diluted in cell culture medium to appropriate concentrations. Cells would be cultured under standard conditions and treated with the compound to assess any potential cellular effects. However, such studies are not common for this intermediate compound.
Animal Protocol
For in vivo animal studies, 5-methylpyrazine-2-carboxylic acid is not administered directly as it is a chemical intermediate rather than a drug candidate. The compound is used in pharmaceutical manufacturing processes to produce active drugs that are subsequently tested in animal models. Storage recommendations typically include keeping the compound in a cool, dry place protected from light. Standard handling procedures for chemical intermediates should be followed.
ADME/Pharmacokinetics
Pharmacokinetic properties of 5-methylpyrazine-2-carboxylic acid have not been characterized as it is a synthetic intermediate. The compound has a molecular weight of 138.12, XLogP of 0.4 indicating moderate lipophilicity, one hydrogen bond donor, four hydrogen bond acceptors, and one rotatable bond. The compound is typically stored as a solid at room temperature in a dry environment. Solubility information is available from chemical suppliers.
Toxicity/Toxicokinetics
Toxicological data for 5-methylpyrazine-2-carboxylic acid are limited as it is a chemical intermediate. Standard laboratory safety practices should be followed when handling this compound. The compound is not intended for direct human consumption; it is used exclusively in pharmaceutical manufacturing processes. Specific LD50 values and detailed toxicological profiles have not been established in the literature for this intermediate compound.
Additional Infomation
5-Methylpyrazine-2-carboxylic acid (CAS 5521-55-1) is a key pharmaceutical intermediate used in the synthesis of glipizide (an antidiabetic sulfonylurea), acipimox (a lipid-lowering agent), and antituberculosis drugs. The compound can be produced by electrolytic oxidation of 2,5-dimethylpyrazine or 2-methyl-5-(substituted)methylpyrazine. It is also known as 3-carboxy-5-methylpyrazine. No clinical trials or regulatory approvals exist for this compound as a drug itself; it is a manufacturing intermediate.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H6N2O2
Molecular Weight
138.12
Exact Mass
138.042
CAS #
5521-55-1
PubChem CID
122831
Appearance
Yellow to brown solid powder
Density
1.3±0.1 g/cm3
Boiling Point
316.5±37.0 °C at 760 mmHg
Melting Point
167-171 °C(lit.)
Flash Point
145.2±26.5 °C
Vapour Pressure
0.0±0.7 mmHg at 25°C
Index of Refraction
1.567
LogP
-0.9
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
1
Heavy Atom Count
10
Complexity
138
Defined Atom Stereocenter Count
0
SMILES
O([H])C(C1C([H])=NC(C([H])([H])[H])=C([H])N=1)=O
InChi Key
RBYJWCRKFLGNDB-UHFFFAOYSA-N
InChi Code
InChI=1S/C6H6N2O2/c1-4-2-8-5(3-7-4)6(9)10/h2-3H,1H3,(H,9,10)
Chemical Name
5-methylpyrazine-2-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.2401 mL 36.2004 mL 72.4008 mL
5 mM 1.4480 mL 7.2401 mL 14.4802 mL
10 mM 0.7240 mL 3.6200 mL 7.2401 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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