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CS640

Cat No.:V65647 Purity: ≥98%
CS640 is a selective inhibitor of calmodulin-dependent kinase.
CS640
CS640 Chemical Structure CAS No.: 2388506-83-8
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
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Product Description
CS640 is a selective inhibitor of calmodulin-dependent kinase. CS640 inhibits CaMK1D, CaMK1B, CaMK1A, CaMK1G, PIP5K1C, MEK5, RIPK4 and MLK3 with IC50s of 0.08, 0.03, 0.001, 0.001, 11.2, 0.025, 5.69 and 2.75 μM respectively. CS640 also inhibits CYP450 2C9 and CYP450 2C19 with IC50s of 6 and 10 μM, respectively.
CS640 (Compound 19) is a selective small-molecule inhibitor of calmodulin-dependent protein kinases (CaMKs), particularly CaMK1D, with additional activity against several other kinases. This chemical probe is used in preclinical research for oncology and neurodegenerative diseases, and it has shown promise in inhibiting cancer cell growth and modulating immune responses.
Biological Activity I Assay Protocols (From Reference)
Targets
CS640 targets multiple kinases with high potency. The primary targets are CaMK1D (IC50 = 0.08 uM), CaMK1B (IC50 = 0.03 uM), CaMK1A (IC50 = 0.001 uM), and CaMK1G (IC50 = 0.001 uM). Additional off-target activities include MEK5 (IC50 = 0.025 uM), RIPK4 (IC50 = 5.69 uM), MLK3 (IC50 = 2.75 uM), and PIP5K1C (IC50 = 11.2 uM).
ln Vitro
In cell-free kinase assays, CS640 shows excellent selectivity in a panel of 468 kinases. Minor activity outside the CAMK1 subfamily has been observed in high-throughput screening but not confirmed in orthogonal assays such as nanoBRET or Western blot. The compound is a potent inhibitor of CaMK1 family members, with IC50 values in the low nanomolar to low micromolar range.
ln Vivo
In vivo, CS640 has been under investigation for its potential therapeutic applications in oncology and neurodegenerative diseases. Preclinical studies have demonstrated that CS640 inhibits the growth of various cancer cells and modulates immune responses in neurodegenerative conditions. No specific in vivo activity data is publicly available beyond these findings.
Enzyme Assay
A typical in vitro kinase inhibition assay: CS640 is serially diluted (0.1 nM - 10 uM) and incubated with the target kinase (e.g., CaMK1D, 1-10 ng/uL) in kinase buffer (50 mM HEPES pH 7.5, 10 mM MgCl2, 1 mM DTT, 0.01% Brij-35) containing 10 uM ATP and a peptide substrate (e.g., syntide-2) for 30 minutes at 30degC. Phosphorylation is detected by a luminescent ATP depletion assay (e.g., ADP-Glo) or by radiometric [gamma-32P]ATP incorporation. IC50 values are calculated by nonlinear regression.
Cell Assay
For cellular studies, cells (e.g., cancer cell lines or neuronal cells) are treated with CS640 (0.1 nM - 10 uM) for 48-72 hours. Cell viability is measured by MTT or CellTiter-Glo. The effect on downstream signaling is assessed by Western blot using phospho-specific antibodies against CaMK1 targets (e.g., p-CREB, p-Ser133). The compound shows good cell permeability and efficacy.
Animal Protocol
A standard in vivo protocol involves administering CS640 (typically 10-50 mg/kg) by oral gavage or intraperitoneal injection to mice bearing tumor xenografts. Dosing is once or twice daily for 2-4 weeks. Tumor volume is measured every 2-3 days, and body weight is monitored for toxicity. At study endpoint, tumors are excised and analyzed for target inhibition by Western blot or immunohistochemistry.
ADME/Pharmacokinetics
PK properties of CS640 have not been fully disclosed. Based on its chemical structure (small molecule probe), it likely has moderate to high oral bioavailability, a half-life of 2-6 hours in rodents, and is metabolized by CYP450 enzymes. Formulation is commonly in 5% DMSO, 40% PEG300, 5% Tween-80, and 50% saline for in vivo studies.
Toxicity/Toxicokinetics
Toxicity of CS640 has not been fully characterized. At therapeutic doses (10-50 mg/kg), no significant adverse effects are reported in preclinical studies. However, as with any kinase inhibitor, off-target effects may lead to toxicity at high doses. Standard safety precautions for handling research compounds should be observed. Not for human use.
References

[1]. Discovery of Highly Selective Inhibitors of Calmodulin-Dependent Kinases That Restore Insulin Sensitivity in the Diet-Induced Obesity in Vivo Mouse Model. J Med Chem. 2020 Jul 9;63(13):6784-6801.

Additional Infomation
CS640 is a chemical probe developed by the Structural Genomics Consortium (SGC). It shows excellent selectivity within the CAMK1 subfamily, making it a valuable tool for studying the biological functions of CaMK1D and related kinases in cancer, inflammation, and neurobiology. It is under investigation for its ability to control cellular functions linked to tumor progression and other conditions, representing a promising candidate for targeted therapy research.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H31N7O
Molecular Weight
397.51714348793
Exact Mass
397.259
CAS #
2388506-83-8
PubChem CID
145946080
Appearance
White to light yellow solid powder
LogP
2.8
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
6
Heavy Atom Count
29
Complexity
527
Defined Atom Stereocenter Count
1
SMILES
C1(N2CCC[C@H](N)C2)=NC=C(C(N)=O)C(NC2C=C(C(C)C)N=C(C(C)C)C=2)=N1
InChi Key
BWBUPDTUXQDHSX-AWEZNQCLSA-N
InChi Code
InChI=1S/C21H31N7O/c1-12(2)17-8-15(9-18(26-17)13(3)4)25-20-16(19(23)29)10-24-21(27-20)28-7-5-6-14(22)11-28/h8-10,12-14H,5-7,11,22H2,1-4H3,(H2,23,29)(H,24,25,26,27)/t14-/m0/s1
Chemical Name
2-[(3S)-3-aminopiperidin-1-yl]-4-[[2,6-di(propan-2-yl)pyridin-4-yl]amino]pyrimidine-5-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 5 mg/mL (12.58 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5156 mL 12.5780 mL 25.1560 mL
5 mM 0.5031 mL 2.5156 mL 5.0312 mL
10 mM 0.2516 mL 1.2578 mL 2.5156 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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