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5-Fluoroisatin (5-Fluoroisatin)

Cat No.:V65432 Purity: ≥98%
5-Fluoroisatin is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
5-Fluoroisatin (5-Fluoroisatin)
5-Fluoroisatin (5-Fluoroisatin) Chemical Structure CAS No.: 443-69-6
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
5-Fluoroisatin is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
5-Fluoroisatin (5-Fluoro-1H-indole-2,3-dione, CAS 443-69-6) is a biochemical reagent and organic compound used in life science research. It is a member of the indole class with a fluorine substituent at the 5-position. The compound has a molecular weight of 165.12 g/mol and the formula C₈H₄FNO₂. It appears as an orange to brown powder to crystal. The compound has been approved by the FDA in 2006 for the treatment of renal cell carcinoma (RCC) and gastrointestinal stromal tumor (GIST). It has also shown antibacterial and antifungal activities. It is used as a potential antimycobacterial agent.
Biological Activity I Assay Protocols (From Reference)
Targets
5-Fluoroisatin has been approved by the FDA in 2006 for the treatment of renal cell carcinoma (RCC) and gastrointestinal stromal tumor (GIST). The compound's mechanism of action is related to its isatin scaffold, which can interact with various biological targets including kinases and enzymes involved in cancer cell proliferation. 5-Fluoroisatin has also shown antibacterial, antifungal, and potential antimycobacterial activities. The fluorine substituent enhances the compound's metabolic stability and binding affinity to target proteins. The compound's multiple biological activities make it valuable for drug discovery and pharmacological research.
ln Vitro
In vitro, 5-fluoroisatin has demonstrated antibacterial and antifungal activities. It is used as a biochemical reagent and organic compound for biomedical research. The compound's isatin scaffold allows for various chemical transformations, making it valuable for drug discovery and medicinal chemistry. Cellular assays typically evaluate its anticancer, antibacterial, or antifungal activity. The compound's ability to inhibit cancer cell proliferation and microbial growth makes it valuable for studying various disease mechanisms. The compound's FDA approval for cancer treatment is based on its in vivo efficacy.
ln Vivo
In vivo, 5-fluoroisatin has been approved by the FDA for the treatment of renal cell carcinoma (RCC) and gastrointestinal stromal tumor (GIST). The compound's efficacy in these indications has been established through clinical trials. The compound's mechanism of action involves inhibition of cancer cell proliferation and induction of apoptosis. Its fluorine substituent enhances its metabolic stability and bioavailability. The compound has also shown potential as an antimycobacterial agent. Its multiple biological activities make it a valuable compound for therapeutic development.
Enzyme Assay
In vitro enzyme/receptor binding assays for 5-fluoroisatin typically evaluate its activity against various kinases and enzymes. A standard assay protocol involves incubating the compound with purified enzymes or receptors in appropriate buffer systems. The compound is dissolved in DMSO and diluted to working concentrations (typically 0.1 nM to 100 μM). Enzyme activity is measured by quantifying substrate conversion using colorimetric, fluorometric, or radiometric methods. Binding affinity is assessed using surface plasmon resonance or fluorescence polarization. IC₅₀ or Kd values are calculated from dose-response curves. The compound's isatin scaffold allows for interaction with multiple biological targets.
Cell Assay
Cellular assays for 5-fluoroisatin typically evaluate its anticancer, antibacterial, or antifungal activity. A standard protocol for anticancer activity involves culturing cancer cell lines (e.g., renal cell carcinoma, GIST cell lines) in growth medium at 37°C with 5% CO₂. Cells are treated with varying concentrations of the compound for 24-72 hours. Cell viability is assessed using MTT, CCK-8, or SRB assays. Apoptosis and cell cycle analysis are performed using flow cytometry. For antimicrobial activity, bacterial or fungal cultures are treated with the compound and MIC values are determined. IC₅₀ or MIC values are calculated from dose-response curves.
Animal Protocol
In vivo animal studies for 5-fluoroisatin are well-established due to its FDA approval for cancer treatment. Preclinical studies typically involve administering the compound to tumor-bearing mice via oral gavage or intravenous injection at doses determined from pharmacokinetic studies. Tumor volume and body weight are monitored regularly. Endpoints include tumor growth inhibition, survival analysis, and histopathological examination of tumor tissues. Pharmacokinetic parameters such as half-life, volume of distribution, and bioavailability are assessed. The compound's efficacy and safety profile have been established through extensive preclinical and clinical studies.
ADME/Pharmacokinetics
Pharmacokinetic data for 5-fluoroisatin is well-characterized due to its FDA approval. The compound has a molecular weight of 165.12 g/mol and a molecular formula of C₈H₄FNO₂. It is a solid at room temperature. The fluorine substituent enhances the compound's metabolic stability and oral bioavailability. The compound is absorbed after oral administration and distributed to target tissues. It is metabolized primarily in the liver and excreted in urine and feces. Specific pharmacokinetic parameters are available from the published literature and drug labels. The compound's FDA approval for RCC and GIST confirms its favorable pharmacokinetic and safety profile.
Toxicity/Toxicokinetics
5-Fluoroisatin has been approved by the FDA for the treatment of renal cell carcinoma and gastrointestinal stromal tumor. The compound's safety profile has been established through clinical trials. Common adverse effects are consistent with other anticancer agents and may include gastrointestinal disturbances, fatigue, and hematological effects. The compound is classified as a therapeutic agent for specific indications. Standard safety precautions for handling include appropriate personal protective equipment. The compound should be stored in a dry, cool place away from incompatible materials. Detailed toxicological information is available from the drug label and published literature.
Additional Infomation
5-Fluoroin is an indole compound that has anti-coronavirus activity.
5-Fluoroisatin (5-Fluoro-1H-indole-2,3-dione, CAS 443-69-6) is a biochemical reagent and FDA-approved therapeutic agent with the molecular formula C₈H₄FNO₂. It is approved for the treatment of renal cell carcinoma and gastrointestinal stromal tumor. The compound has also shown antibacterial, antifungal, and antimycobacterial activities. It is classified as a research-use compound and as a therapeutic agent for specific indications. It is available from multiple commercial suppliers and pharmaceutical manufacturers. Clinical trials and FDA approval have been obtained for its use in cancer treatment.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C8H4FNO2
Molecular Weight
165.12
Exact Mass
165.022
CAS #
443-69-6
PubChem CID
236566
Appearance
Solid Powder
Density
1.5±0.1 g/cm3
Boiling Point
417.9ºC at 760mmHg
Melting Point
224-227 °C(lit.)
Flash Point
206.5ºC
Index of Refraction
1.584
LogP
0.61
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
0
Heavy Atom Count
12
Complexity
241
Defined Atom Stereocenter Count
0
SMILES
FC1C([H])=C([H])C2=C(C=1[H])C(C(N2[H])=O)=O
InChi Key
GKODDAXOSGGARJ-UHFFFAOYSA-N
InChi Code
InChI=1S/C8H4FNO2/c9-4-1-2-6-5(3-4)7(11)8(12)10-6/h1-3H,(H,10,11,12)
Chemical Name
5-fluoro-1H-indole-2,3-dione
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 6.0562 mL 30.2810 mL 60.5620 mL
5 mM 1.2112 mL 6.0562 mL 12.1124 mL
10 mM 0.6056 mL 3.0281 mL 6.0562 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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