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Serratia marcescens nuclease

Cat No.:V65407 Purity: ≥95%
Serratia marcescens nuclease is a nonspecific nuclease.
Serratia marcescens nuclease
Serratia marcescens nuclease Chemical Structure CAS No.: 9025-65-4
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5KU
10KU
25KU
50KU
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Product Description
Serratia marcescens nuclease is a nonspecific nuclease. Serratia marcescens nuclease has a wide range of uses due to its potent digestive activity on DNA and RNA.
Serratia marcescens nuclease (EC 3.1.30.2, Benzonase, CAS 9025-65-4) is a biochemical reagent and enzyme used in life science research. It is a non-specific endonuclease derived from the bacterium Serratia marcescens. The enzyme is a dimer of ~30 kDa subunits with two essential disulfide bonds. It exhibits extraordinarily high specific activity and can completely digest all forms of DNA and RNA (single-stranded, double-stranded, linear, and circular). It produces 5' monophosphate-terminated oligonucleotides of 3-5 bases in length. The enzyme has broad utility in molecular biology for nucleic acid degradation and removal.
Biological Activity I Assay Protocols (From Reference)
Targets
Serratia marcescens nuclease is a non-specific endonuclease that targets both DNA and RNA substrates. As an enzyme, its primary targets are nucleic acids, which it cleaves by hydrolyzing phosphodiester bonds. The enzyme exhibits potent digestive activity toward both DNA and RNA substrates, including single-stranded, double-stranded, linear, and circular forms. It produces 5' monophosphate-terminated oligonucleotides of 3-5 bases in length. Its mechanism of action involves cleavage of phosphodiester bonds in nucleic acids, regardless of sequence.
ln Vitro
In vitro, Serratia marcescens nuclease is used as a biochemical reagent for nucleic acid degradation and removal in molecular biology applications. It is used to remove nucleic acids from protein samples, to reduce viscosity in cell lysates, and to eliminate nucleic acid contamination in biopharmaceutical production. The enzyme's high specific activity and broad substrate specificity make it valuable for various applications, including protein purification, sample preparation for electrophoresis, and removal of DNA/RNA from recombinant protein preparations. Cellular assays may evaluate its effectiveness in degrading nucleic acids in cell lysates.
ln Vivo
In vivo, Serratia marcescens nuclease is not used as a therapeutic agent but has applications in biopharmaceutical manufacturing to remove nucleic acid contaminants from recombinant protein products. The enzyme is classified for research use and as a manufacturing aid, not for human or veterinary therapeutic applications. Its primary value lies in its use as a research reagent and in biopharmaceutical production to ensure product purity. Specific in vivo data for therapeutic applications is not available.
Enzyme Assay
In vitro enzyme assays for Serratia marcescens nuclease typically evaluate its nuclease activity. A standard protocol involves incubating the enzyme with nucleic acid substrates (e.g., DNA or RNA) in appropriate buffer systems (e.g., Tris-HCl, pH 8.0, with Mg²⁺). The enzyme is diluted to working concentrations (typically 0.1-10 U/μL). Nuclease activity is measured by monitoring the decrease in absorbance at 260 nm (hyperchromic effect) due to nucleic acid degradation, or by gel electrophoresis to visualize DNA/RNA fragmentation. One unit of activity is defined as the amount of enzyme that causes a ΔA₂₆₀ of 1.0 per minute under standard conditions.
Cell Assay
Cellular assays for Serratia marcescens nuclease typically evaluate its ability to degrade nucleic acids in cell lysates. A standard protocol involves lysing cells in a buffer containing the nuclease and incubating at 37°C for a defined period. Nucleic acid degradation is assessed by agarose gel electrophoresis or by measuring DNA/RNA concentration using fluorometric assays (e.g., PicoGreen, RiboGreen). The enzyme's effectiveness in reducing viscosity or removing nucleic acid contaminants is evaluated. Protein integrity is assessed by SDS-PAGE to ensure the nuclease does not degrade proteins of interest.
Animal Protocol
In vivo animal studies for Serratia marcescens nuclease are not standard, as it is primarily an in vitro research reagent and manufacturing aid. The enzyme is classified for research use only and is not intended for human or veterinary therapeutic applications. Any animal studies would be limited to evaluating the enzyme's safety as a manufacturing aid in biopharmaceutical production. The enzyme's primary value lies in its use as a research reagent and in biopharmaceutical manufacturing. Specific in vivo protocols are not available in the public literature.
ADME/Pharmacokinetics
Pharmacokinetic data for Serratia marcescens nuclease is not applicable, as it is an enzyme used as a research reagent and manufacturing aid rather than a therapeutic agent. The enzyme has a molecular weight of approximately 28-30 kDa (monomer) and forms a dimer of ~60 kDa. It is a colorless clear liquid with an activity of ≥1.5×10⁶ U/mg. The enzyme is stored in buffered aqueous glycerol solution at -20°C. As a protein, it would be degraded by proteases if administered systemically. Specific ADME data is not available.
Toxicity/Toxicokinetics
Serratia marcescens nuclease is classified for research use only and is not intended for human or veterinary therapeutic applications. Standard safety precautions include handling with appropriate personal protective equipment (gloves, lab coat, safety goggles) in a well-ventilated area. The enzyme should be stored at -20°C in appropriate buffer to maintain activity. Acute toxicity data is not readily available in the public literature. As with all research chemicals, appropriate laboratory safety practices should be followed. No specific LD₅₀ values or detailed toxicological profiles are available in the public domain.
References
[1]. "Vafina G, et al. Endonuclease from Gram-Negative Bacteria Serratia marcescens Is as Effective as Pulmozyme in the Hydrolysis of DNA in Sputum. Front Pharmacol. 2018;9:114. Published 2018 Feb 16. doi: "
[2]. "Friedhoff P, et al. A procedure for renaturation and purification of the extracellular Serratia marcescens nuclease from genetically engineered Escherichia coli. Protein Expr Purif. 1994;5(1):37-43. "
Additional Infomation
Serratia marcescens nuclease (EC 3.1.30.2, Benzonase, CAS 9025-65-4) is a non-specific endonuclease derived from Serratia marcescens. It exhibits high specific activity and can completely digest all forms of DNA and RNA, producing 5' monophosphate-terminated oligonucleotides. The enzyme is widely used in molecular biology for nucleic acid removal and in biopharmaceutical manufacturing to eliminate nucleic acid contaminants. It is classified as a research-use-only reagent and is available from multiple commercial suppliers. No clinical trials or approved drug status exist for this compound as it is not a therapeutic agent.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
CAS #
9025-65-4
Appearance
Liquid
Density
1.3±0.1 g/cm3
Boiling Point
413.1±45.0 °C at 760 mmHg
Flash Point
203.6±28.7 °C
Vapour Pressure
0.0±1.0 mmHg at 25°C
Index of Refraction
1.605
LogP
1.19
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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