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6-Bromo-1H-indazole

Cat No.:V65296 Purity: ≥98%
6-Bromo-1H-indazole is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
6-Bromo-1H-indazole
6-Bromo-1H-indazole Chemical Structure CAS No.: 79762-54-2
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
6-Bromo-1H-indazole is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
6-Bromo-1H-indazole (CAS 79762-54-2) is a brominated heterocyclic compound belonging to the indazole class, consisting of a fused benzene-pyrazole bicyclic ring system with a bromine substituent at the C6 position. Its molecular formula is C7H5BrN2 with a molecular weight of 197.03 g/mol. This compound serves as a biochemical reagent and organic/chemical intermediate for biomedical research. It is utilized as a biomaterial for life science research and as a sulfonylation reagent for organic synthesis and drug discovery. The indazole scaffold is a privileged structure in medicinal chemistry, found in numerous pharmacologically active compounds.
Biological Activity I Assay Protocols (From Reference)
Targets
6-Bromo-1H-indazole does not have a defined primary pharmacological target as it is primarily a chemical reagent and synthetic intermediate. In medicinal chemistry, the brominated indazole scaffold serves as a versatile building block for synthesizing biologically active molecules that may target various enzymes, receptors, and other proteins. The indazole core is a bioisostere of indole and benzimidazole, capable of engaging in π-π stacking, hydrogen bonding, and hydrophobic interactions with target proteins. The bromine substituent allows for further functionalization through cross-coupling reactions such as Suzuki-Miyaura, Sonogashira, and Buchwald-Hartwig couplings, enabling the construction of diverse compound libraries for drug discovery.
ln Vitro
In vitro activity of 6-Bromo-1H-indazole as a standalone compound is not typically evaluated, as its primary role is as a synthetic intermediate. The compound's biological activity would be assessed through the final drug molecules synthesized from this building block. In biochemical research, 6-Bromo-1H-indazole may be used as a reference compound or as a starting material for generating compound libraries. The indazole scaffold is known to be present in various pharmacologically active compounds, including kinase inhibitors, anti-inflammatory agents, and antimicrobial agents. The bromine substituent provides a handle for introducing diverse functional groups to optimize biological activity and drug-like properties.
ln Vivo
In vivo activity data for 6-Bromo-1H-indazole are not available, as the compound is not intended for direct administration as a therapeutic agent. It is classified as a biochemical reagent and organic synthesis intermediate. Any in vivo effects would be associated with the final drug products synthesized from this intermediate rather than the compound itself. The compound's role in drug discovery is to enable the synthesis of complex molecular scaffolds that can be evaluated in animal models of disease. Researchers handling this compound should follow appropriate safety protocols for chemical handling in laboratory settings.
Enzyme Assay
In vitro enzyme or receptor binding assays for 6-Bromo-1H-indazole are not standard, as the compound is a chemical reagent rather than a drug candidate. If evaluated as a potential ligand, typical binding assays might involve radioligand displacement techniques using membrane preparations from cells expressing specific receptors. For enzyme inhibition studies, purified enzyme is incubated with varying concentrations of the compound in appropriate buffer systems, and activity is measured using chromogenic or fluorogenic substrates. However, such studies are more commonly performed on the final pharmaceutical compounds derived from this building block rather than on the intermediate itself. The compound may serve as a reference or control in certain biochemical experiments.
Cell Assay
Cell-based in vitro experiments using 6-Bromo-1H-indazole are not typically performed, as the compound is a research chemical and synthetic intermediate. When used in cell biology research, the compound might be incorporated into larger molecules that are then tested on cultured cell lines. Standard cell culture protocols would involve seeding cells in appropriate media (e.g., DMEM, RPMI-1640 with 10% FBS) at 37°C in a 5% CO₂ atmosphere, treating with test compounds at various concentrations, and assessing cell viability, proliferation, or other endpoints using assays such as MTT, CCK-8, or flow cytometry. The compound's solvent compatibility (typically DMSO) and potential cytotoxicity should be considered.
Animal Protocol
In vivo animal studies are not conducted with 6-Bromo-1H-indazole itself, as it is a chemical reagent rather than a therapeutic agent. The compound is utilized in the synthesis of drug candidates that may subsequently be evaluated in animal models. Typical in vivo protocols for drug candidates synthesized from this building block would involve administration via oral gavage, intravenous injection, or intraperitoneal injection to rodents (mice or rats) at various dose levels. Pharmacodynamic endpoints, pharmacokinetic sampling, and toxicological assessments would be performed according to the specific research objectives. All animal studies must be conducted in accordance with institutional animal care and use committee guidelines.
ADME/Pharmacokinetics
Pharmacokinetic properties of 6-Bromo-1H-indazole have not been characterized, as the compound is a chemical reagent for research use. As a small heterocyclic molecule with molecular weight 197.03 g/mol, it would be expected to have moderate oral bioavailability if administered, though this is not relevant to its intended use. The compound's LogP is estimated to be around 2.0–2.5, indicating moderate lipophilicity. The bromine atom and indazole ring would influence metabolic pathways, potentially involving oxidative metabolism or debromination. However, these properties are not studied for the compound itself, as it is not developed as a pharmaceutical. For drug discovery applications, the pharmacokinetic profile would be optimized at the final drug candidate stage.
Toxicity/Toxicokinetics
Toxicological data for 6-Bromo-1H-indazole are limited, as the compound is handled as a research chemical in laboratory environments. Standard safety precautions should be followed, including the use of appropriate personal protective equipment such as gloves, goggles, and lab coats. The compound may cause irritation to skin, eyes, and respiratory tract upon exposure. Inhalation of dust should be avoided, and adequate ventilation should be ensured when handling the compound. In case of contact, affected areas should be rinsed with plenty of water. The compound should be stored at -20°C for long-term stability, with a shelf life of up to 3 years as a powder and 1 year in solution at -80°C. Comprehensive toxicological studies have not been reported.
Additional Infomation
6-Bromo-1H-indazole is a chemical research tool and synthetic intermediate rather than an approved pharmaceutical drug. Its primary applications are in organic synthesis and drug discovery, where it serves as a versatile building block for constructing indazole-containing compounds. The indazole scaffold is a privileged structure in medicinal chemistry, present in numerous pharmacologically active compounds including kinase inhibitors, anti-inflammatory agents, and antimicrobial agents. The bromine substituent enables further functionalization through cross-coupling reactions, allowing for the synthesis of diverse compound libraries. No clinical trials or regulatory approvals have been documented for this compound as a therapeutic agent. The compound is commercially available as a research-grade chemical, supplied for laboratory synthesis and biochemical research.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C7H5BRN2
Molecular Weight
197.03
Exact Mass
195.963
CAS #
79762-54-2
PubChem CID
17842471
Appearance
Off-white to yellow solid powder
Density
1.8±0.1 g/cm3
Boiling Point
333.8±15.0 °C at 760 mmHg
Melting Point
180-182ºC
Flash Point
155.7±20.4 °C
Vapour Pressure
0.0±0.7 mmHg at 25°C
Index of Refraction
1.728
LogP
2.59
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
1
Rotatable Bond Count
0
Heavy Atom Count
10
Complexity
129
Defined Atom Stereocenter Count
0
SMILES
BrC1C=C2C(C=NN2)=CC=1
InChi Key
WMKDUJVLNZANRN-UHFFFAOYSA-N
InChi Code
InChI=1S/C7H5BrN2/c8-6-2-1-5-4-9-10-7(5)3-6/h1-4H,(H,9,10)
Chemical Name
6-bromo-1H-indazole
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.0754 mL 25.3768 mL 50.7537 mL
5 mM 1.0151 mL 5.0754 mL 10.1507 mL
10 mM 0.5075 mL 2.5377 mL 5.0754 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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