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Citalopram-d6 (citalopram-d6)

Cat No.:V64946 Purity: ≥98%
Citalopram-d6 is the deuterium labelled form of Citalopram.
Citalopram-d6 (citalopram-d6)
Citalopram-d6 (citalopram-d6) Chemical Structure CAS No.: 1190003-26-9
Product category: Isotope-Labeled Compounds
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of Citalopram-d6 (citalopram-d6):

  • Citalopram-d4 hydrobromide (Citalopram-d4 (bromide))
  • Citalopram-d6 oxalate (citalopram-d6 oxalate)
  • Didesmethylcitalopram-d6 hydrochloride
  • Desmethylcitalopram-d3 hydrochloride (DCIT-d3 hydrochloride)
  • Citalopram
  • Escitalopram-d6 oxalate (escitalopram d6 oxalate)
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Top Publications Citing lnvivochem Products
Product Description
Citalopram-d6 is the deuterium labelled form of Citalopram.
Citalopram-d6 (CAS 1190003-26-9) is the deuterium-labeled form of citalopram, a selective serotonin reuptake inhibitor (SSRI) used as an antidepressant. Its molecular formula is C₂₀H₁₅D₆FN₂O with a molecular weight of approximately 330.43. The compound contains six deuterium atoms and is used as an internal standard in pharmacokinetic and bioanalytical studies to accurately quantify citalopram in biological samples using mass spectrometry. Citalopram is an inhibitor of the serotonin (5-HT) transporter (SERT).
Biological Activity I Assay Protocols (From Reference)
Targets
Citalopram-d6 targets the same molecular target as its non-deuterated form, the serotonin transporter (SERT). Citalopram is a potent and selective inhibitor of SERT, blocking the reuptake of serotonin (5-HT) from the synaptic cleft into the presynaptic neuron. This increases serotonin levels in the synapse, enhancing serotonergic neurotransmission. Citalopram has negligible affinity for other neurotransmitter transporters and receptors, contributing to its selectivity. The labeled compound is used as a tracer to study the pharmacokinetics and metabolism of citalopram.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as quantitative tracers while the drugs were being developed. Because deuteration may have an effect on a drug's pharmacokinetics and metabolic properties, it is a cause for concern [1].
The deuterated compound itself does not possess intrinsic pharmacological activity in vitro; its biological activity is identical to that of citalopram. Citalopram is a potent inhibitor of SERT with a Kᵢ of approximately 1-2 nM. In vitro studies have demonstrated that citalopram effectively inhibits serotonin uptake in cells expressing SERT. Citalopram is highly selective for SERT compared to other transporters (dopamine and norepinephrine transporters). The labeled compound is used as an internal standard for quantifying citalopram in biological samples.
ln Vivo
Citalopram-d6 is not used as a therapeutic agent; its non-deuterated form, citalopram, is an orally active SSRI used in the treatment of major depressive disorder, anxiety disorders, and obsessive-compulsive disorder. Citalopram is well-absorbed after oral administration and has a half-life of approximately 35 hours. It is metabolized in the liver via cytochrome P450 2C19, 3A4, and 2D6 to demethylated metabolites. The labeled compound is used in pharmacokinetic studies to accurately measure citalopram concentrations in plasma and other biological matrices.
Enzyme Assay
In vitro receptor binding assays for citalopram-d6 are not standard, as it is an analytical standard. The SERT inhibitory activity of its non-deuterated form is assessed using serotonin uptake assays in cells or synaptosomes expressing SERT. Cells are incubated with [³H]serotonin and varying concentrations of citalopram, and the amount of serotonin taken up is measured by scintillation counting. IC₅₀ values are calculated from dose-response curves. The labeled compound is used as an internal standard for LC-MS/MS analysis.
Cell Assay
In vitro cell culture experiments are not performed with citalopram-d6. When studying the effects of citalopram in cellular systems, the non-labeled compound is used. Cells expressing SERT are treated with citalopram, and serotonin uptake or downstream signaling pathways are measured. The labeled compound is used as an internal standard for LC-MS/MS analysis of citalopram concentrations in cell culture media or lysates.
Animal Protocol
In vivo animal studies with citalopram-d6 are not conducted, as it is an analytical standard. When used in pharmacokinetic studies, the labeled compound serves as an internal standard for the quantification of citalopram in animal plasma or tissue samples. In typical protocols, animals are administered citalopram, and blood samples are collected at various time points. The labeled internal standard is added to the samples before analysis by LC-MS/MS to ensure accurate and precise quantification.
ADME/Pharmacokinetics
Pharmacokinetic properties of citalopram-d6 itself are not characterized, as it is not a drug substance. Citalopram has a bioavailability of approximately 80% after oral administration, with a half-life of 35 hours in humans. It is metabolized primarily by cytochrome P450 2C19, 3A4, and 2D6 to demethylated metabolites. Citalopram is excreted in urine (60%) and feces (40%). The deuterated compound is used as an internal standard to accurately quantify citalopram in pharmacokinetic studies.
Toxicity/Toxicokinetics
Citalopram-d6 is not a therapeutic agent and has not been evaluated for toxicity in humans. Its non-deuterated form, citalopram, is generally well-tolerated, with common side effects including nausea, dry mouth, somnolence, and sexual dysfunction. Serious side effects include QT prolongation and serotonin syndrome. The deuterated compound is for research use only and should be handled with standard laboratory precautions.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019;53(2):211-216.

Additional Infomation
Citalopram-d6 is a stable isotope-labeled internal standard used in pharmacokinetic and metabolic studies of citalopram. It is also known as citalopram-d6. The compound is used in analytical method development, method validation, and quality control applications for generic drug products. The incorporation of deuterium allows for accurate quantification of citalopram in biological samples using mass spectrometry.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H15D6FN2O
Molecular Weight
330.43
Exact Mass
410.127
CAS #
1190003-26-9
Related CAS #
Citalopram;59729-33-8;Citalopram-d4 hydrobromide;1219803-58-3;Citalopram-d6 oxalate;1246819-94-2
PubChem CID
45038689
Appearance
Typically exists as solid at room temperature
Flash Point
9℃
LogP
3.2
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
5
Heavy Atom Count
24
Complexity
466
Defined Atom Stereocenter Count
0
SMILES
[2H]C(N(C([2H])([2H])[2H])CCCC1(C2=CC=C(F)C=C2)OCC2C=C(C#N)C=CC1=2)([2H])[2H].Br
InChi Key
WSEQXVZVJXJVFP-WFGJKAKNSA-N
InChi Code
InChI=1S/C20H21FN2O/c1-23(2)11-3-10-20(17-5-7-18(21)8-6-17)19-9-4-15(13-22)12-16(19)14-24-20/h4-9,12H,3,10-11,14H2,1-2H3/i1D3,2D3
Chemical Name
1-[3-[bis(trideuteriomethyl)amino]propyl]-1-(4-fluorophenyl)-3H-2-benzofuran-5-carbonitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0264 mL 15.1318 mL 30.2636 mL
5 mM 0.6053 mL 3.0264 mL 6.0527 mL
10 mM 0.3026 mL 1.5132 mL 3.0264 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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