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N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester

Cat No.:V64504 Purity: ≥98%
N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester is a Boron-containing chemical intermediate for organic synthecis.
N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester
N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester Chemical Structure CAS No.: 286961-15-7
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester is a Boron-containing chemical intermediate for organic synthecis.
N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester is a boronic ester compound used as a reagent in organic synthesis, particularly in Suzuki-Miyaura cross-coupling reactions. It features a Cbz (carbobenzyloxy) protecting group on the tetrahydropyridine nitrogen and a boronic acid pinacol ester functional group. The compound has the molecular formula C19H26BNO4 and is used as a building block for the synthesis of more complex molecules, particularly in medicinal chemistry and drug discovery applications.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary targets of N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester are not biological targets but rather chemical reaction partners in organic synthesis. As a boronic ester, it serves as a nucleophilic coupling partner in Suzuki-Miyaura cross-coupling reactions with various aryl or vinyl halides. The Cbz protecting group provides stability and allows for selective deprotection under hydrogenation conditions. The compound is used as a building block for the synthesis of pharmaceutically relevant molecules.
ln Vitro
In vitro activity for N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester refers to its chemical reactivity rather than biological activity. The compound demonstrates utility as a nucleophilic coupling partner in Suzuki-Miyaura cross-coupling reactions. Its reactivity is enhanced by the boronic ester functional group, which participates in transmetallation reactions with palladium catalysts. The tetrahydropyridine ring provides a scaffold for further functionalization in synthetic sequences.
ln Vivo
In vivo activity data are not applicable for N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester, as it is a chemical reagent rather than a pharmacologically active compound. The compound is not intended for biological or therapeutic applications. Its use is limited to organic synthesis and medicinal chemistry as a building block for the preparation of more complex molecules.
Enzyme Assay
Non-cellular assays for N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester typically involve characterization of its chemical properties and purity. Standard analytical techniques include NMR spectroscopy, HPLC, and mass spectrometry to confirm identity and purity. The compound's reactivity in Suzuki-Miyaura cross-coupling reactions is assessed by monitoring reaction progress using TLC or HPLC. Solubility testing is performed in common organic solvents for synthetic applications.
Cell Assay
Cellular assays are not applicable for N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester, as it is a chemical reagent not intended for cell-based studies. The compound is used in organic synthesis and drug discovery as a building block, but it is not studied for biological activity in cell culture systems. Its use is limited to chemical reactions outside of living systems.
Animal Protocol
In vivo animal experiments are not conducted for N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester, as it is a chemical reagent rather than a therapeutic or pharmacological compound. The compound is not administered to animals for any research purpose. Its applications are strictly limited to synthetic chemistry and medicinal chemistry as a reagent or building block.
ADME/Pharmacokinetics
Pharmacokinetic properties are not applicable for N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester, as it is a chemical reagent and not a pharmaceutical compound. The compound's molecular weight and physicochemical properties are relevant for its use in organic synthesis. Solubility information and stability data are available from chemical suppliers for synthetic chemistry applications.
Toxicity/Toxicokinetics
Standard laboratory safety precautions should be followed when handling N-Cbz-1,2,3,6-tetrahydropyridine-4-boronic acid pinacol ester. As with all chemical reagents, it may be irritating to skin, eyes, and respiratory tract. Appropriate personal protective equipment should be worn when handling the compound. The compound should be stored in a cool, dry place away from incompatible materials. Consult the safety data sheet for detailed safety information.
Additional Infomation
Other information includes the compound's use as a synthetic building block in organic chemistry and drug discovery. It is commonly used in Suzuki-Miyaura cross-coupling reactions to introduce the tetrahydropyridine moiety into target molecules. The Cbz protecting group allows for selective deprotection under hydrogenation conditions, enabling further functionalization. The compound is valuable for the synthesis of pharmaceutical intermediates and natural product analogs.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H26BNO4
Molecular Weight
343.23
Exact Mass
343.195
CAS #
286961-15-7
PubChem CID
11290836
Appearance
White to off-white solid powder
Density
1.1±0.1 g/cm3
Boiling Point
418.2±55.0 °C at 760 mmHg
Melting Point
88-90℃
Flash Point
206.7±31.5 °C
Vapour Pressure
0.0±1.0 mmHg at 25°C
Index of Refraction
1.541
LogP
3.524
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
4
Heavy Atom Count
25
Complexity
510
Defined Atom Stereocenter Count
0
SMILES
O=C(N1CCC(B2OC(C)(C)C(C)(C)O2)=CC1)OCC3=CC=CC=C3
InChi Key
QDSFHRPYZPQWEJ-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H26BNO4/c1-18(2)19(3,4)25-20(24-18)16-10-12-21(13-11-16)17(22)23-14-15-8-6-5-7-9-15/h5-10H,11-14H2,1-4H3
Chemical Name
benzyl 4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 18 mg/mL (52.44 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.9135 mL 14.5675 mL 29.1350 mL
5 mM 0.5827 mL 2.9135 mL 5.8270 mL
10 mM 0.2913 mL 1.4567 mL 2.9135 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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