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1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid (1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid)

Cat No.:V62471 Purity: ≥98%
1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid is a compound used in neurodegenerative disease study.
1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid (1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid)
1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid (1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid) Chemical Structure CAS No.: 6649-91-8
Product category: Others 12
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
1,2,3,4-Tetrahydro-β-carboline-1-carboxylic acid is a compound used in neurodegenerative disease study.
1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid (CAS 6649-91-8) is a naturally occurring beta-carboline alkaloid with potential neuroactive properties. It has the molecular formula C12H12N2O2 and a molecular weight of 216.24. This compound is an important building block in the synthesis of various pharmacologically active compounds and is also studied as a potential biomarker for certain diseases, particularly in the context of neurodegenerative disease research.
Biological Activity I Assay Protocols (From Reference)
Targets
1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid is a heterocyclic compound that serves as a scaffold for the development of various pharmacologically active molecules. Structurally, it resembles the neurotransmitter serotonin and can interact with receptors of the central nervous system (CNS). Derivatives of this beta-carboline core have been studied for their affinity for benzodiazepine receptors, monoamine oxidase (MAO) enzymes, and other CNS targets. It is also a precursor to harmalan, tetrahydroharman, and harman in rats.
ln Vitro
In vitro, 1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid and its derivatives have been studied for their neuroactive properties. It can be converted to harmalan, tetrahydroharman, and harman in rats, which are known to affect the CNS. The compound itself can be used as a starting material in organic synthesis to produce more complex beta-carboline derivatives with potential biological activity. The compound is primarily used in chemical biology research.
ln Vivo
In vivo, 1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid has been detected as an endogenous component in the brain and other tissues in some animal species. It is also a metabolite of tryptophan in the presence of ethanol. beta-Carboline derivatives have been shown to exert effects on the CNS, including sedation, anxiety modulation, and tremor induction. The compound is metabolized in rats to harmalan, tetrahydroharman, and harman, which are known to have biological activities. It is used in research on neurodegenerative diseases.
Enzyme Assay
There is no standard cell-free binding assay for this specific compound. However, a generic biochemical assay for beta-carbolines is the monoamine oxidase (MAO) inhibition assay. Recombinant human MAO-A or MAO-B is incubated with a fluorogenic substrate (e.g., kynuramine) and varying concentrations of the test compound. The product (4-hydroxyquinoline) is measured fluorometrically (excitation 315 nm, emission 380 nm). The half-maximal inhibitory concentration (IC50) is calculated from the inhibition curve. This compound is used as a reference standard.
Cell Assay
An in vitro cellular assay for beta-carboline derivatives is a neuronal cell viability assay using SH-SY5Y human neuroblastoma cells. Cells are seeded in 96-well plates and treated with varying concentrations of the test compound (e.g., 0-500 microM) for 24-48 hours. Cell viability is measured using an MTT or CCK-8 assay. Additionally, the generation of reactive oxygen species (ROS) can be measured using a fluorescent dye such as DCFH-DA. These assays help assess the potential neurotoxic or neuroprotective effects.
Animal Protocol
In vivo studies with beta-carboline derivatives are often conducted in rodents to study their effects on the CNS. For example, rats are administered the test compound (e.g., 5-50 mg/kg) via intraperitoneal (IP) injection or oral gavage. Behavioral tests such as the open field test (locomotor activity), elevated plus maze (anxiety), and rotarod (motor coordination) are performed. Additionally, brain tissue can be collected for analysis of monoamine levels (serotonin, dopamine, norepinephrine) using HPLC-ECD. The conversion of the compound to harmalan, tetrahydroharman, and harman can be measured by LC-MS/MS.
ADME/Pharmacokinetics
1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid has a molecular weight of 216.24 and a molecular formula of C12H12N2O2. It is a small, lipophilic molecule with a calculated LogP around 1-2. It is likely to have good cell permeability and moderate oral bioavailability. For in vivo studies, it can be formulated in vehicles such as 0.5% CMC-Na (carboxymethylcellulose sodium) or a mixture of DMSO, PEG300, Tween 80, and saline. Its metabolic half-life in rats is expected to be short (1-4 hours) due to rapid metabolism and conjugation. The compound is stable as a powder at -20degC.
Toxicity/Toxicokinetics
Specific toxicity data for 1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid is not available. beta-Carbolines, in general, can exhibit neurotoxic effects at high doses. Some beta-carbolines, such as harmane and norharmane, are found in tobacco smoke and have been associated with tremor, anxiety, and other neurological effects. However, this tetrahydro derivative is generally considered less toxic. It should be handled with standard laboratory safety precautions, including the use of gloves, goggles, and a lab coat. Inhalation and ingestion should be avoided.
References
[1]. J Gynther,et al. Decarboxylation of 1,2,3,4-tetrahydro-beta-carboline-1-carboxylic acids in brain homogenate and catalysis by pyridoxal-5'-phosphate. Biochem Pharmacol.1986 Aug 15;35(16):2671-5.
Additional Infomation
1,2,3,4-Tetrahydro-beta-carboline-1-carboxylic acid (CAS 6649-91-8) is a naturally occurring beta-carboline alkaloid that serves as a chemical building block for the synthesis of pharmacologically active compounds. It is related to the class of beta-carbolines, which include compounds with neuroactive, antineoplastic, and antimicrobial properties. This compound is used in the study of neurodegenerative diseases and as an analytical standard. It is not a drug and has no approved therapeutic indications. The compound is for research and development use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H12N2O2
Molecular Weight
216.24
Exact Mass
216.09
CAS #
6649-91-8
PubChem CID
145879
Appearance
Light brown to brown solid powder
Density
1.377g/cm3
Boiling Point
498.3ºC at 760 mmHg
Melting Point
210-212ºC
Flash Point
255.1ºC
Index of Refraction
1.692
LogP
1.768
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
1
Heavy Atom Count
16
Complexity
295
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C2C(=C1)C3=C(C(C(=O)O)NCC3)N2
InChi Key
XGCIVVYTCDKDLC-UHFFFAOYSA-N
InChi Code
InChI=1S/C12H12N2O2/c15-12(16)11-10-8(5-6-13-11)7-3-1-2-4-9(7)14-10/h1-4,11,13-14H,5-6H2,(H,15,16)
Chemical Name
2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-1-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 5 mg/mL (23.12 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.6245 mL 23.1225 mL 46.2449 mL
5 mM 0.9249 mL 4.6245 mL 9.2490 mL
10 mM 0.4624 mL 2.3122 mL 4.6245 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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