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ARUK2001607

Cat No.:V62214 Purity: ≥98%
ARUK2001607 is a selective phosphatidylinositol 5-phosphate 4-kinase gamma (PI5P4Kγ) inhibitor (antagonist) with a Kd of 7.1 nM.
ARUK2001607
ARUK2001607 Chemical Structure CAS No.: 2924824-56-4
Product category: Others 12
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
10mg
50mg
Other Sizes
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Product Description
ARUK2001607 is a selective phosphatidylinositol 5-phosphate 4-kinase gamma (PI5P4Kγ) inhibitor (antagonist) with a Kd of 7.1 nM. ARUK2001607 showed high selectivity over >150 other kinases.
ARUK2001607 (CAS 2924824-56-4) is a potent, selective, and brain-penetrant small molecule inhibitor of phosphatidylinositol 5-phosphate 4-kinase gamma (PI5P4Kγ). With a molecular formula of C₁₄H₁₃N₃O₂S₂ and a molecular weight of 319.40 g/mol, its IUPAC name is 6-Methyl-N-(4-(methylsulfonyl)phenyl)thieno[2,3-d]pyrimidin-4-amine. It was identified through a virtual screening workflow followed by medicinal chemistry optimization of a thienylpyrimidine chemotype. ARUK2001607 serves as an in vivo-ready tool molecule for investigating the biological role of PI5P4Kγ in diseases such as cancer, neurodegeneration, and immunological disorders.
Biological Activity I Assay Protocols (From Reference)
Targets
Kd: 7.1 nM (PI5P4Kγ)[1]
Phosphatidylinositol 5-phosphate 4-kinase gamma (PI5P4Kγ).
ln Vitro
ARUK2001607 is a selective inhibitor of PI5P4Kγ with a binding Kd of 7.1 nM. It demonstrates high selectivity, showing no significant activity against more than 150 other kinases in a broad selectivity panel. An X-ray crystal structure of ARUK2001607 in complex with PI5P4Kγ has been solved, confirming its binding mode. The compound also showed good potency against both wild-type and a mutant construct (γ+) of PI5P4Kγ.
ln Vivo
ARUK2001607 (5 mg/kg; ip dose): selected in vivo mouse pharmacokinetic characteristics (15) [1] T1/2 (h) AUC (hr·ng/mL) [plasma] at 0.5h (ng /mL] [brain] at 0.5h (ng/g) Kp ARUK2001607 (15) 0.74 4520 2773 1590 0.58
In vivo pharmacokinetic data for ARUK2001607 have been reported. Following intraperitoneal (ip) administration at 5 mg/kg in mice, the compound exhibited a half-life (T₁/₂) of 0.74 hours and an AUC of 4520 hr·ng/mL. At 0.5 hours post-dose, the plasma concentration was 2773 ng/mL and the brain concentration was 1590 ng/mL, yielding a brain-to-plasma ratio (Kp) of 0.58, indicating good brain penetration.
Enzyme Assay
PI5P4Kγ enzyme inhibition assays are typically performed using biochemical activity assays, such as radiometric or luminescent ADP-Glo™ kinase assays, to measure the compound's inhibitory potency (IC₅₀). Binding affinity (Kd) is determined using surface plasmon resonance (SPR) or similar biophysical methods. Selectivity is assessed by profiling the compound against a panel of more than 150 kinases at a single concentration, followed by IC₅₀ determination for any significant hits.
Cell Assay
While specific cell-based assay data for ARUK2001607 are not detailed in the provided search results, its effects on the PI5P4Kγ signaling pathway can be assessed in relevant cell lines. This typically involves treating cells with the compound and then measuring downstream effects, such as changes in phosphatidylinositol 5-phosphate (PI5P) levels or alterations in cell signaling pathways (e.g., Akt/mTOR) that are regulated by PI5P4Kγ activity.
Animal Protocol
In vivo studies have been conducted in mouse models. Pharmacokinetic parameters were determined following intraperitoneal (ip) administration of the compound at a dose of 5 mg/kg. Blood and brain tissue samples were collected at various time points to assess plasma and brain concentrations, allowing for the calculation of key PK parameters and the brain penetration ratio (Kp).
ADME/Pharmacokinetics
ARUK2001607 has a molecular weight of 319.40 g/mol and is soluble in DMSO (e.g., 30 mg/mL). Its pharmacokinetic properties have been characterized in mice following intraperitoneal administration, revealing a half-life of 0.74 hours and an AUC of 4520 hr·ng/mL. The compound is brain penetrant, with a brain-to-plasma ratio (Kp) of 0.58 at 0.5 hours post-dose. It is recommended to be stored as a powder at -20°C for up to 3 years.
Toxicity/Toxicokinetics
ARUK2001607 has been evaluated against a Cerep safety panel, indicating that its safety profile has been assessed in a broad range of potential off-targets. Specific toxicity data, such as LD₅₀ or detailed adverse effect profiles, are not detailed in the provided search results; however, its characterization as an "in vivo-ready tool molecule" suggests it has been deemed suitable for use in animal studies.
References

[1]. The Identification of Potent, Selective, and Brain Penetrant PI5P4Kγ Inhibitors as In Vivo-Ready Tool Molecules. J Med Chem. 2022 Dec 14.

Additional Infomation
ARUK2001607 was developed by researchers and described in the Journal of Medicinal Chemistry in December 2022. It is a thienylpyrimidine-based compound identified from a virtual screen and optimized to be a potent and selective tool molecule for studying PI5P4Kγ. PI5P4Kγ is an attractive therapeutic target for diseases such as cancer, neurodegeneration, and immunological disorders. ARUK2001607 is for research use only and is not for human therapeutic use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C14H13N3O2S2
Molecular Weight
319.401920080185
Exact Mass
319.044
CAS #
2924824-56-4
PubChem CID
166175743
Appearance
Light yellow to light brown solid powder
LogP
3.1
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
3
Heavy Atom Count
21
Complexity
457
Defined Atom Stereocenter Count
0
SMILES
CC1=CC2=C(N=CN=C2S1)NC3=CC=C(C=C3)S(=O)(=O)C
InChi Key
QVQHWPLHUNEREE-UHFFFAOYSA-N
InChi Code
InChI=1S/C14H13N3O2S2/c1-9-7-12-13(15-8-16-14(12)20-9)17-10-3-5-11(6-4-10)21(2,18)19/h3-8H,1-2H3,(H,15,16,17)
Chemical Name
6-methyl-N-(4-methylsulfonylphenyl)thieno[2,3-d]pyrimidin-4-amine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 25 mg/mL (78.27 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.1309 mL 15.6544 mL 31.3087 mL
5 mM 0.6262 mL 3.1309 mL 6.2617 mL
10 mM 0.3131 mL 1.5654 mL 3.1309 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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