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Bis(2-cyanoethyl) diisopropylphosphoramidite

Cat No.:V61827 Purity: ≥98%
Bis(2-cyanoethyl) diisopropylphosphoramidite is a phosphoramidite monomer that may be utilized in the preparation /synthesis of oligonucleotides.
Bis(2-cyanoethyl) diisopropylphosphoramidite
Bis(2-cyanoethyl) diisopropylphosphoramidite Chemical Structure CAS No.: 102690-88-0
Product category: Others 12
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Bis(2-cyanoethyl) diisopropylphosphoramidite is a phosphoramidite monomer that may be utilized in the preparation /synthesis of oligonucleotides.
Bis(2-cyanoethyl) diisopropylphosphoramidite is a phosphoramidite monomer that may be utilized in the preparation/synthesis of oligonucleotides. It is a chemical reagent used in nucleic acid chemistry for the synthesis of modified oligonucleotides and other phosphorus-containing compounds. The compound is also known as Bis(2-cyanoethyl)-N,N-diisopropyl Phosphoramidite.
Biological Activity I Assay Protocols (From Reference)
Targets
Bis(2-cyanoethyl) diisopropylphosphoramidite does not have a biological target as it is a chemical reagent. Its "target" in a research context is the chemical synthesis of oligonucleotides, where it serves as a phosphoramidite monomer. The compound's phosphoramidite group reacts with the 5'-hydroxyl group of nucleosides during oligonucleotide synthesis, forming phosphite triester intermediates that are subsequently oxidized to phosphates.
ln Vitro
In vitro, Bis(2-cyanoethyl) diisopropylphosphoramidite is not biologically active as it is a chemical reagent. Its activity is measured by its chemical reactivity and suitability as a precursor for oligonucleotide synthesis. The compound is used in automated DNA/RNA synthesizers to incorporate phosphoramidite groups into growing oligonucleotide chains.
ln Vivo
Bis(2-cyanoethyl) diisopropylphosphoramidite is not used in vivo as a therapeutic agent. It is a chemical reagent used in nucleic acid chemistry. The compound itself is not administered to animals or humans. Its in vivo effects, if any, have not been characterized as it is not a drug.
Enzyme Assay
Non-cell-based assays for Bis(2-cyanoethyl) diisopropylphosphoramidite involve characterization of its chemical properties and purity. The compound's structure is confirmed by NMR and MS. Its purity is determined by HPLC or ³¹P NMR. The compound's chemical properties including molecular formula (C₁₂H₂₂N₃O₂P) and molecular weight (271.30) are characterized. Its stability and reactivity in oligonucleotide synthesis are evaluated.
Cell Assay
Cellular assays for Bis(2-cyanoethyl) diisopropylphosphoramidite are not performed as the compound is a chemical reagent rather than a biologically active compound. The compound is used in chemical synthesis and is not added to cell cultures for biological evaluation.
Animal Protocol
Bis(2-cyanoethyl) diisopropylphosphoramidite is not used in animal experiments as it is a chemical reagent. The compound is used in chemical synthesis and is not administered to animals. Its use is limited to nucleic acid chemistry and chemical manufacturing.
ADME/Pharmacokinetics
Pharmacokinetic properties are not applicable to Bis(2-cyanoethyl) diisopropylphosphoramidite as it is not a therapeutic agent. The compound is a chemical reagent used in nucleic acid chemistry. Its chemical stability, solubility, and reactivity are characterized for synthetic applications. No PK data are available as the compound is not a drug.
Toxicity/Toxicokinetics
The toxicity of Bis(2-cyanoethyl) diisopropylphosphoramidite has not been comprehensively evaluated as it is not a therapeutic agent. The compound is handled as a chemical reagent with standard laboratory safety precautions. As a phosphorus-containing compound, it may be irritating to skin, eyes, and respiratory tract. The compound is for research use only and is not intended for human consumption.
References
[1]. /
Additional Infomation
Bis(2-cyanoethyl) diisopropylphosphoramidite (CAS# 102690-88-0) is a phosphoramidite monomer with the molecular formula C₁₂H₂₂N₃O₂P and a molecular weight of 271.30. It is also known as Bis(2-cyanoethyl)-N,N-diisopropyl Phosphoramidite. The compound is utilized in the preparation/synthesis of oligonucleotides. As of current knowledge, Bis(2-cyanoethyl) diisopropylphosphoramidite is not approved as a therapeutic agent.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H22N3O2P
Molecular Weight
271.30
Exact Mass
271.145
CAS #
102690-88-0
PubChem CID
3626483
Appearance
Colorless to light yellow liquid(Density:1.039 g/cm3)
Boiling Point
335.3ºC at 760mmHg
Flash Point
156.6ºC
Vapour Pressure
0.000121mmHg at 25°C
LogP
3.192
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
9
Heavy Atom Count
18
Complexity
286
Defined Atom Stereocenter Count
0
SMILES
CC(C)N(C(C)C)P(OCCC#N)OCCC#N
InChi Key
LDHWBEHZLFDXCU-UHFFFAOYSA-N
InChi Code
InChI=1S/C12H22N3O2P/c1-11(2)15(12(3)4)18(16-9-5-7-13)17-10-6-8-14/h11-12H,5-6,9-10H2,1-4H3
Chemical Name
3-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.6860 mL 18.4298 mL 36.8596 mL
5 mM 0.7372 mL 3.6860 mL 7.3719 mL
10 mM 0.3686 mL 1.8430 mL 3.6860 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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