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Alizarin Red S

Alias: ARS
Cat No.:V128529 Purity: ≥98%
Alizarin Red S is an anthraquinone derivative dye.
Alizarin Red S
Alizarin Red S Chemical Structure CAS No.: 83-61-4
Product category: Fluorescent Dye
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
Alizarin Red S is an anthraquinone derivative dye. When bound to cations such as calcium ions, the functional groups of Alizarin Red S form coordination bonds with the cations through oxygen atoms, thereby emitting orange-red fluorescence. Alizarin Red S can be used for screening calcium compounds in synovial fluid and detecting osteoblast differentiation, and can also be used for staining mouse bones. Excitation/emission wavelength: 500/570 nm.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Guidelines (The following is our recommended operating procedure. This procedure is for reference only and should be modified according to your specific needs.) 1. Preparation of Alizarin Red S[1] 1.1 Prepare a 2% sodium alizarin red S aqueous solution. 1.2 Using a pH meter, add ammonium hydroxide dropwise with stirring to adjust the pH to 4.2. 1.3 Filter the solution through a 0.45 μm microporous membrane and store it in a brown bottle. 1.4 Filter the solution again through a 0.22 μm microporous membrane immediately before use. 2. Alizarin Red S detection of osteoblast differentiation[2] 2.1 Osteogenic differentiation induction: MC3T3-E1 cells were seeded in well plates and cultured in α-MEM medium (without ascorbic acid) supplemented with 10% fetal bovine serum. Osteogenic differentiation was induced by osteogenic medium (OSM) containing ascorbic acid (50 μg/mL) and sodium β-glycerophosphate (10 mM). 2.2 Staining: MC3T3-E1 cells were washed with 1×PBS, fixed with 70% ethanol for 10 minutes at room temperature, rinsed with distilled water, and then stained with Alizarin Red S for 10 minutes to detect calcium deposition in the matrix. 2.3 Data analysis: The area of the red region was positively correlated with the degree of osteogenic differentiation. 3. Screening of calcium compounds in synovial fluid with Alizarin Red S [1] 3.1 Synovial fluid preparation: Synovial fluid was drawn with a disposable syringe and the liquid was transferred to a clean test tube containing heparin sodium anticoagulant. 3.2 Staining: A drop of synovial fluid was taken from the bottom of the test tube, dropped onto a clean glass slide, a drop of 2% Alizarin Red S solution was added, mixed well, and covered with a coverslip. 3.3 Within three minutes after mixing, the cells were observed under a regular optical microscope, and the degree of orange-red staining observed in each high-power field was graded. The area of the red region was proportional to the content of calcium compounds.
ln Vivo
In vivo staining of bones with Alizarin Red S[3] (1) Rat treatment: 20% Alizarin Red S solution (100 mg/kg, single dose) was injected into albino rats, and the rats were sacrificed 2 minutes to 8 hours after injection. (2) Skull treatment: The rat skull was cut off and soaked in 2% potassium hydroxide solution for several days. All soft tissues were removed, and after separation, it was rinsed with tap water and stored in 80% ethanol. The skull was embedded in unsaturated polyester resin and cut into 50-60 μm thick sections along the sagittal or coronal plane with a diamond saw. (3) Microscopic examination: Under 80x magnification, the bones emitted green autofluorescence, and Alizarin Red S emitted red fluorescence.
References

[1]. Alizarin red S staining as a screening test to detect calcium compounds in synovial fluid. Arthritis Rheum. 1983 Feb;26(2):191-200.

[2]. Stimulatory Effects of KPR-A148 on Osteoblast Differentiation and Bone Regeneration. Tissue Eng Regen Med. 2019 Jul 17;16(4):405-413.

[3]. The in vivo staining of bone with alizarin red S. J Anat. 1969 Nov;105(Pt 3):533-45.

[4]. Giemsa as a fluorescent dye for mineralizing bone-like nodules in vitro. Biomed Mater. 2012 Feb;7(1):011001.

[5]. Application of excitation and emission matrix fluorescence (EEM) and UV-vis absorption to monitor the characteristics of Alizarin Red S (ARS) during electro-Fenton degradation process. Chemosphere.2013 Nov;93(11):2805-13.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C14H8O7S
Molecular Weight
320.27
CAS #
83-61-4
Related CAS #
Alizarin Red S sodium; Alizarin Red S Indicator (4.3-6.3), IND
Appearance
Yellow to brown solid
SMILES
O=S(C(C=C1C2=O)=C(O)C(O)=C1C(C3=C2C=CC=C3)=O)(O)=O
Synonyms
ARS
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~312.24 mM; with sonication)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.1224 mL 15.6118 mL 31.2237 mL
5 mM 0.6245 mL 3.1224 mL 6.2447 mL
10 mM 0.3122 mL 1.5612 mL 3.1224 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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