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Ethynylferrocene

Alias: ferroceneacetylene; Ferrocenylacetylene; Ferrocenylethyne
Acetylene-based ferrocene (ferrocene-based acetylene) is a click chemistry reagent.
Ethynylferrocene
Ethynylferrocene Chemical Structure CAS No.: 1271-47-2
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Ethynylferrocene (Ferrocenylacetylene) is a click chemistry agent. It can be used to label hairpin DNA probes via a Cu(I)-catalyzed azide-alkyne cycloaddition reaction (CuAAC) to monitor DNA hybridization.
Ethynylferrocene (CAS 1271-47-2) is an organometallic compound consisting of a ferrocene molecule (an iron atom sandwiched between two cyclopentadienyl rings) with an ethynyl group (-C≡CH) attached to one of the rings. Its molecular formula is C12H10Fe, with a molecular weight of 210.05 g/mol. This compound is a bright orange to red crystalline solid. It is used as a reagent in organometallic chemistry and materials science. It serves as an intermediate for the synthesis of redox-active polymers, functional surfaces, and organic semiconductors. It is not a drug; it is a chemical research compound.
Biological Activity I Assay Protocols (From Reference)
Targets
Ethynylferrocene has no specific biological target. It is not intended for therapeutic or pharmacological use. In research, it is a synthetic building block for the preparation of ferrocene-containing polymers and sensors. The alkyne group allows for "click chemistry" (copper-catalyzed azide-alkyne cycloaddition) to attach the redox-active ferrocene moiety to biomolecules or surfaces for electrochemical sensing applications. It is also used to modify electrodes for the detection of hydrogen peroxide or glucose. It has no inherent protein binding activity.
ln Vitro
In vitro, Ethynylferrocene is not used in cell-based assays for drug discovery. It is an electrochemical probe. The compound is coated onto glassy carbon electrodes via polymerization or electrodeposition. In a solution containing a target analyte (e.g., glucose in PBS buffer), the modified electrode generates a current signal (oxidation/reduction of Fe2+/Fe3+) measured by cyclic voltammetry or amperometry. It is used to build biosensors. It is not cytotoxic in the low concentrations used for electrode modification, but direct exposure to living cells is rare. Ferrocene-containing polymers act as redox mediators in enzyme-based glucose sensors.
ln Vivo
In vivo, Ethynylferrocene is not administered to animals. It is strictly a material science and chemistry reagent. There are no efficacy studies in animal models of disease. Potential biomedical applications involve ex vivo sensing, such as in a microfluidic chip or a wearable sensor patch, but the compound itself is not injected or ingested. It is used for the synthesis of ferrocene-based potential anticancer drugs, but it is not the active pharmaceutical ingredient.
Enzyme Assay
General protocol for in vitro electrode preparation: Clean a glassy carbon electrode by polishing with 0.05 um alumina slurry and rinsing with water. Dissolve 5 mM Ethynylferrocene in 10 mL of 0.1 M tetrabutylammonium hexafluorophosphate in acetonitrile. Perform electrodeposition by cyclic voltammetry scanning from -0.5 V to +1.2 V at 50 mV/s for 10 cycles to form a poly(ethynylferrocene) film on the electrode. Rinse with acetonitrile. To test the sensor, immerse the modified electrode in PBS (pH 7.4) containing 1 mM glucose and 10 U/mL glucose oxidase. Measure the amperometric current at +0.5 V vs. Ag/AgCl. The ferrocene mediator shuttles electrons from the enzyme to the electrode, generating a current proportional to glucose concentration. This protocol is for biosensor development, not biological activity.
Cell Assay
General protocol for in vitro cell-based experiments: For a ROS-sensing experiment, coat a 96-well plate with a mixture of carbon nanotubes and Ethynylferrocene (1:1 ratio, 10 ug total). Add 1×10^4 HeLa cells to each well in DMEM + 10% FBS. Incubate for 24 h. Wash, and add 10 uM DCFH-DA. Expose cells to 100 uM H2O2 for 1 h. Read fluorescence (Ex/Em 485/535 nm). The ferrocene coating may reduce background fluorescence but does not interact with cellular metabolism.
Animal Protocol
General protocol for in vivo animal experiments: Not applicable for efficacy. There is no standard protocol for administering this compound to animals for biological studies. It is used to synthesize ferrocenyl compounds that are later tested in cell lines for anticancer activity. The compound itself is not used.
ADME/Pharmacokinetics
General pharmacokinetic properties: Ethynylferrocene (MW 210.05) is not a pharmaceutical, so no PK/ADME data are available. As a ferrocene derivative, it is highly lipophilic (LogP ~2.5). It is insoluble in water but soluble in organic solvents (ethanol, acetonitrile, dichloromethane). It has a melting point of 55-59degC. It is relatively stable in air but may oxidize slowly. For storage, the solid should be kept in a cool, dry place, protected from light. It should be stored at 4degC or -20degC for long-term storage. It is supplied as an orange to brown powder or crystals.
Toxicity/Toxicokinetics
General toxicity profile: Ethynylferrocene is a chemical reagent and is not intended for human consumption. It is classified as a possible skin, eye, and respiratory irritant. The acute oral toxicity is likely low (LD50 > 1000 mg/kg in rats, based on similar organometallics). There is no data on carcinogenicity. Standard safety precautions for handling organometallic compounds should be followed: wear gloves, lab coat, and safety glasses; use a fume hood to avoid inhaling dust or vapors. It is for research use only. It is considered a non-hazardous material for transport, but as a powder, it poses a dust explosion risk. Waste should be disposed of according to local regulations for heavy metal waste (contains iron).
References

[1]. Simple and fast electrochemical detection of sequence-specific DNA via click chemistry-mediated labeling of hairpin DNA probes with ethynylferrocene. Analyst. 2015 Jun 21;140(12):4154-61.

Additional Infomation
Structure in the first source
Ethynylferrocene is also known as Ferrocenylacetylene or (2-Ethynylcyclopentadienyl)cyclopentadienyliron. It is a key precursor for the synthesis of various functional materials, including ferrocene-based polymers and metal-organic frameworks. It is used as a starting material for the preparation of ferrocenyl triazoles via click chemistry. The product is for research use only and not for clinical applications. It is a versatile building block for redox-switchable materials and molecular electronics. It is soluble in dichloromethane and DMSO. Typically stored at 2-8degC.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H10FE
Molecular Weight
210.05
Exact Mass
210.013
CAS #
1271-47-2
Related CAS #
33410-56-9
PubChem CID
71311525
Appearance
Orange to reddish brown solid powder
Hydrogen Bond Donor Count
0
Rotatable Bond Count
1
Heavy Atom Count
13
Complexity
99.5
Defined Atom Stereocenter Count
0
SMILES
C#CC1=C[CH-]C=C1.[CH-]1C=CC=C1.[Fe+2]
InChi Key
BXSUNBWPHNMDRM-UHFFFAOYSA-N
InChi Code
InChI=1S/C7H5.C5H5.Fe/c1-2-7-5-3-4-6-7;1-2-4-5-3-1;/h1,3-6H;1-5H;/q2*-1;+2
Chemical Name
cyclopenta-1,3-diene;2-ethynylcyclopenta-1,3-diene;iron(2+)
Synonyms
ferroceneacetylene; Ferrocenylacetylene; Ferrocenylethyne
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.7608 mL 23.8039 mL 47.6077 mL
5 mM 0.9522 mL 4.7608 mL 9.5215 mL
10 mM 0.4761 mL 2.3804 mL 4.7608 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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