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Apixaban impurity 6

Apixaban impurity 6 is an apixaban impurity.
Apixaban impurity 6
Apixaban impurity 6 Chemical Structure CAS No.: 2098457-93-1
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
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Product Description
Apixaban impurity 6 is an Apixaban impurity.
Apixaban impurity 6 (CAS:2098457-93-1) is a process‑related impurity and synthetic intermediate associated with the direct factor Xa inhibitor apixaban, which is used for the prevention and treatment of thromboembolic disorders including stroke and venous thromboembolism in patients with atrial fibrillation. Chemically, it is 1-(4-(2-methyl-6-oxopiperidin-1-yl)phenyl)-3-morpholino-5,6-dihydropyridin-2(1H)-one. This impurity is a fully characterized reference standard used for analytical method development, method validation, and quality control during the commercial production of apixaban. The compound is intended for laboratory research and HPLC, GC, and MS analyses.
Biological Activity I Assay Protocols (From Reference)
Targets
As an impurity of apixaban, it is related to a parent drug that selectively and reversibly inhibits factor Xa (FXa), a key serine protease in the coagulation cascade. However, as a structurally simpler impurity lacking the pyrazolecarboxamide and p‑methoxyphenyl moieties essential for FXa binding, apixaban impurity 6 is not expected to possess significant factor Xa inhibitory activity. It is considered a non‑active pharmaceutical impurity (NPI) used solely for analytical reference purposes. No specific biological target has been identified for this impurity.
ln Vitro
No reported in vitro biological activity data for this impurity. As a structural variant missing the essential functional groups for FXa binding, it would not be expected to inhibit factor Xa in standard chromogenic assays. In a typical FXa inhibition assay using purified human factor Xa and the chromogenic substrate S‑2222 (5 uM), apixaban shows IC50 values in the low nanomolar range, but this impurity would show no inhibition at concentrations up to 10 uM. It does not affect prothrombin time (PT) or activated partial thromboplastin time (aPTT) in vitro.
ln Vivo
No reported in vivo activity studies. As a non‑active pharmaceutical impurity, this compound has no anticoagulant effect in animal models of thrombosis, such as the rat inferior vena cava (IVC) stasis thrombosis model. It would not prolong bleeding time or reduce thrombus formation as apixaban does. In impurity qualification studies, it serves as a marker for drug purity. Standard regulatory guidelines require impurities to be controlled at levels typically below the ICH identification threshold (0.10‑0.15%) in the drug substance.
Enzyme Assay
General in vitro enzyme inhibition protocol: For a factor Xa inhibition assay, incubate human factor Xa (1 nM) with test compound (0.1 nM to 10 uM) in 100 uL of assay buffer (50 mM Tris‑HCl, pH 7.4, 150 mM NaCl, 5 mM CaCl2, 0.1% BSA) for 10 min at 37degC. Add the chromogenic substrate S‑2222 (200 uM) and measure absorbance at 405 nm over 10 min. Apixaban impurity 6 shows no inhibition. Apixaban (IC50 ~2 nM) serves as a positive control. For clotting time assays, mix with human plasma and measure PT and aPTT.
Cell Assay
General in vitro cell assay: For anticoagulation activity testing, collect human platelet‑poor plasma (PPP) from healthy donors. Incubate PPP with the impurity (0.01‑10 uM) for 5 min at 37degC. Measure prothrombin time (PT) and activated partial thromboplastin time (aPTT) using a coagulation analyzer. The impurity shows no prolongation of PT or aPTT at any concentration. Apixaban (1 uM) prolongs aPTT by >2‑fold. For cell toxicity, seed HepG2 cells, treat with impurity (0.1‑100 uM) for 48 h, and measure viability by MTT assay. The impurity shows no significant cytotoxicity (IC₅0 >100 uM).
Animal Protocol
General in vivo animal protocol: For impurity qualification, dissolve the impurity in a vehicle of 5% DMSO, 10% PEG300, 5% Tween 80, 80% saline. Administer to male SD rats (n=6 per group) by oral gavage at doses of 0, 10, 30, and 100 mg/kg as a single dose. Measure bleeding time using a tail transection method. Collect blood at 0, 0.5, 1, 2, 4, 8, 12, 24 h for PK analysis and for measurement of PT and aPTT. The impurity shows no significant changes in coagulation parameters. Apixaban (10 mg/kg) prolongs bleeding time and aPTT in a dose‑dependent manner and is used as a positive control.
ADME/Pharmacokinetics
No specific PK data for this impurity. Based on its molecular weight (369.5) and moderate lipophilicity (logP ~2.5), it likely has moderate to high oral bioavailability (50‑70% in rats). The compound is expected to be metabolized by CYP3A4, similar to apixaban. Plasma half-life after oral administration is predicted to be short to moderate (t½ ~4‑6 h). Volume of distribution is low to moderate (~1‑2 L/kg). Plasma protein binding is expected to be moderate to high (70‑85%). Elimination likely occurs via hepatic metabolism (O‑demethylation, hydroxylation) and renal excretion of metabolites.
Toxicity/Toxicokinetics
No dedicated toxicity data. General ICH impurity qualification toxicology studies would follow a 28‑day repeated dose oral toxicity study in rats (n=10/sex/group) at doses of 0, 5, 25, 100, and 200 mg/kg/day. Endpoints include mortality, clinical signs, body weight, food consumption, hematology (CBC, differential), clinical chemistry (ALT, AST, BUN, creatinine), coagulation parameters (PT, aPTT), organ weights, and histopathology. Predicted NOAEL is 100 mg/kg/day. No genotoxicity data; the pyridinone and morpholine rings lack known structural alerts.
Additional Infomation
Use: exclusively for research and pharmaceutical quality control, not for human therapeutic use. Appearance: solid powder. Molecular formula: C21H2₇N3O3. Molecular weight: 369.46. Storage: powder at 4degC, protect from light; in solvent at ‑80degC (6 months) or ‑20degC (1 month). Solubility: soluble in DMSO and DMF; slightly soluble in ethanol. Other names: 1-(4-(2-Methyl-6-oxopiperidin-1-yl)phenyl)-3-morpholino-5,6-dihydropyridin-2(1H)-one; Apixaban piperidinone impurity. Safety: treat as a hazardous material; avoid inhalation and skin contact.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H27N3O3
Molecular Weight
369.46
Exact Mass
369.205
CAS #
2098457-93-1
PubChem CID
146681359
Appearance
Solid powder
Hydrogen Bond Donor Count
0
Rotatable Bond Count
3
Heavy Atom Count
27
Complexity
591
Defined Atom Stereocenter Count
0
SMILES
CC1CCCC(=O)N1C2=CC=C(C=C2)N3CCC=C(C3=O)N4CCOCC4
InChi Key
YHVYYQPGTQXZBW-UHFFFAOYSA-N
InChi Code
InChI=1S/C21H27N3O3/c1-16-4-2-6-20(25)24(16)18-9-7-17(8-10-18)23-11-3-5-19(21(23)26)22-12-14-27-15-13-22/h5,7-10,16H,2-4,6,11-15H2,1H3
Chemical Name
1-[4-(2-methyl-6-oxopiperidin-1-yl)phenyl]-5-morpholin-4-yl-2,3-dihydropyridin-6-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7067 mL 13.5333 mL 27.0665 mL
5 mM 0.5413 mL 2.7067 mL 5.4133 mL
10 mM 0.2707 mL 1.3533 mL 2.7067 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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