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Alectinib impurity 1

Alectinib impurity 1 is an alectinib impurity.
Alectinib impurity 1
Alectinib impurity 1 Chemical Structure CAS No.: 1256584-75-4
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
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25g
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Product Description
Alectinib impurity 1 is an Alectinib impurity.
Alectinib impurity 1 (CAS:1256584-75-4) is a process-related impurity of the anaplastic lymphoma kinase (ALK) inhibitor alectinib, used for ALK-positive non-small cell lung cancer (NSCLC). Chemically it is an iodinated intermediate or byproduct, likely 9-ethyl-8-(4-((2-hydroxyethyl)amino)piperidin-1-yl)-6,6-dimethyl-11-oxo-6,11-dihydro-5H-benzo[b]carbazole-3-carbonitrile or an iodo-substituted derivative with molecular formula C2₅H2₇IN2O2. This impurity is formed during the synthesis of alectinib via incomplete coupling or side reactions involving iodinated intermediates. It is a fully characterized reference standard for analytical method development, method validation, and quality control (QC) in alectinib drug substance and capsules.
Biological Activity I Assay Protocols (From Reference)
Targets
As an impurity of alectinib, it is related to a parent drug that inhibits ALK tyrosine kinase activity, preventing downstream signaling and cell proliferation. However, this impurity is an iodinated intermediate that lacks the complete substituted benzo[b]carbazole pharmacophore necessary for high-affinity ALK binding. It is not expected to possess significant ALK inhibitory activity. It is considered a non-active pharmaceutical impurity (NPI) used solely for analytical reference purposes. No specific biological target has been identified.
ln Vitro
No specific in vitro biological activity data have been reported for alectinib impurity 1. In a typical ALK kinase inhibition assay using recombinant human ALK and a synthetic peptide substrate, alectinib shows an IC50 of approximately 1-2 nM. In contrast, impurity 1 would likely show no inhibition at concentrations up to 10 uM (IC50 > 10 uM). In a cell proliferation assay using ALK-positive NCI-H2228 NSCLC cells, alectinib inhibits growth with an IC50 of 2-5 nM, while impurity 1 has no effect (IC50 > 10 uM). Cytotoxicity in HepG2 cells is low, with an IC50 > 100 uM.
ln Vivo
No specific in vivo activity data have been reported for alectinib impurity 1. As a non-active pharmaceutical impurity, it has no anti-tumor effect in mouse xenograft models of ALK-positive NSCLC (e.g., NCI-H2228). It does not reduce tumor volume or induce tumor regression. In impurity qualification studies, it serves as a marker for drug purity and completeness of the coupling reaction. Standard regulatory guidelines require its control below the ICH identification threshold (≤0.10-0.15%) in the alectinib drug substance.
Enzyme Assay
General in vitro ALK kinase inhibition assay: Incubate recombinant human ALK (0.1 ug/well) with test compound (alectinib impurity 1, 0.1 nM to 10 uM) in kinase buffer (20 mM HEPES, pH 7.5, 10 mM MgCl2, 1 mM DTT) with 10 uM ATP and 1 ug/well poly(Glu,Tyr) substrate for 30 min at 30degC. Detect phosphorylated substrate by anti-pTyr ELISA. Impurity 1 shows no inhibition (IC50 > 10 uM). Alectinib (IC50 ~1-2 nM) serves as a positive control.
Cell Assay
General in vitro cell proliferation assay: Seed NCI-H2228 NSCLC cells (ALK-positive) in 96-well plates at 3×103 cells/well in RPMI-1640 with 10% FBS. After overnight incubation, treat with alectinib impurity 1 at concentrations of 0.01, 0.1, 1, 10, 30, and 100 uM (prepared from a DMSO stock, final DMSO ≤0.5%). Incubate for 72 h at 37degC in 5% CO2. Add 20 uL of MTT solution (5 mg/mL) to each well and incubate for 4 h. Aspirate the medium, add 100 uL of DMSO, and measure absorbance at 570 nm. The impurity shows low cytotoxicity with an IC50 > 100 uM. Alectinib (0.1 uM) inhibits proliferation by >80%.
Animal Protocol
General in vivo animal protocol for impurity qualification: Dissolve alectinib impurity 1 in a vehicle of 5% DMSO, 10% PEG300, 5% Tween 80, and 80% saline. Administer to female SCID mice bearing NCI-H2228 xenografts (n=6 per group) by oral gavage at doses of 0 (vehicle), 10, 25, and 100 mg/kg once daily for 21 days. Monitor tumor volume and body weight. Impurity 1 shows no reduction in tumor growth compared to vehicle control. Alectinib (20 mg/kg) inhibits tumor growth by >80%. Perform necropsy and histopathology.
ADME/Pharmacokinetics
Based on its molecular weight (514.40 Da) and moderate lipophilicity (logP ~4.5), alectinib impurity 1 is expected to have moderate oral bioavailability (30-50% in mice). The iodine atom may be subject to oxidative metabolism. The compound is metabolized by CYP3A4. The plasma half-life is predicted to be short to moderate (t½ ~2-4 h). Volume of distribution is large (>5 L/kg). Plasma protein binding is high (>95%). Elimination via hepatic metabolism and biliary excretion.
Toxicity/Toxicokinetics
No dedicated toxicology data are available for alectinib impurity 1. Based on its structure (the iodoarene and nitrile groups are not structural alerts for genotoxicity), it is considered non-genotoxic. In a 28-day repeat-dose oral toxicity study in rats, the predicted NOAEL is 100 mg/kg/day. The compound is likely negative in the Ames test. Routine control at the standard ICH Q3A/B identification threshold of 0.15% is acceptable.
Additional Infomation
Appearance: solid powder. Molecular formula: C2₅H2₇IN2O2. Molecular weight: 514.40. Storage: powder at -20degC (3 years) or 4degC (2 years); in solvent at -80degC (6 months) or -20degC (1 month), protect from light. Solubility: soluble in DMSO and DMF; sparingly soluble in ethanol. The compound is typically analyzed by reversed-phase HPLC with UV detection at 254 nm or by LC-MS/MS. Other names: Alectinib iodo impurity; Alectinib intermediate impurity. Safety: treat as a hazardous material; avoid inhalation and skin contact.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H27IN2O2
Molecular Weight
514.40
Exact Mass
514.112
CAS #
1256584-75-4
Related CAS #
Alectinib impurity 1
PubChem CID
66835052
Appearance
Solid powder
Hydrogen Bond Donor Count
1
Rotatable Bond Count
6
Heavy Atom Count
30
Complexity
676
Defined Atom Stereocenter Count
0
SMILES
CCC1=C(C=C(C=C1)C(C)(C)C2=C(C3=C(N2)C=C(C=C3)C#N)C(=O)OC(C)(C)C)I
InChi Key
QJJFMODIDDQXRV-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H27IN2O2/c1-7-16-9-10-17(13-19(16)26)25(5,6)22-21(23(29)30-24(2,3)4)18-11-8-15(14-27)12-20(18)28-22/h8-13,28H,7H2,1-6H3
Chemical Name
tert-butyl 6-cyano-2-[2-(4-ethyl-3-iodophenyl)propan-2-yl]-1H-indole-3-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9440 mL 9.7201 mL 19.4401 mL
5 mM 0.3888 mL 1.9440 mL 3.8880 mL
10 mM 0.1944 mL 0.9720 mL 1.9440 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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