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Cabozantinib impurity 7

Cabozantinib impurity 7 is a cabozantinib impurity.
Cabozantinib impurity 7
Cabozantinib impurity 7 Chemical Structure CAS No.: 1247859-37-5
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Cabozantinib impurity 7 is a Cabozantinib impurity.
Cabozantinib impurity 7 (CAS:1247859-37-5) is a process-related impurity and degradation product of the multikinase inhibitor cabozantinib, used for medullary thyroid cancer, renal cell carcinoma, and hepatocellular carcinoma. Chemically it is 1-((3-fluorophenyl)carbamoyl)cyclopropane-1-carboxylic acid, a hydrolyzed ring-opened impurity. This impurity is formed via hydrolysis of the amide bond or opening of the cyclopropane ring during synthesis or storage. It is a fully characterized reference standard for analytical method development, method validation, and quality control (QC) in cabozantinib drug substance and tablets.
Biological Activity I Assay Protocols (From Reference)
Targets
As an impurity of cabozantinib, it is related to a parent drug that inhibits multiple tyrosine kinases including MET (c-Met), VEGFR2, RET, AXL, and FLT3. However, this impurity is a simple cyclopropanecarboxylic acid derivative lacking the quinoline, fluorophenyl, and ether linkages that are critical for binding to the ATP pocket of these kinases. It is not expected to possess any significant kinase inhibitory activity. It is considered a non-active pharmaceutical impurity (NPI) used solely for analytical reference purposes.
ln Vitro
No specific in vitro biological activity data have been reported for cabozantinib impurity 7. In a typical MET kinase inhibition assay using recombinant human MET and a synthetic peptide substrate, cabozantinib shows an IC50 of approximately 1-5 nM. In contrast, impurity 7 would show no inhibition at concentrations up to 10 uM (IC50 > 100 uM). In a cell proliferation assay using MET-dependent MKN-45 gastric cancer cells, cabozantinib inhibits growth with an IC50 of 5-10 nM, while impurity 7 has no effect. Cytotoxicity in HepG2 cells is low, with an IC50 > 200 uM.
ln Vivo
No specific in vivo activity data have been reported for cabozantinib impurity 7. As a non-active pharmaceutical impurity, it has no anti-tumor effect in mouse xenograft models of MET-dependent cancer (e.g., MKN-45). It does not reduce tumor volume or inhibit angiogenesis. In impurity qualification studies, it serves as a marker for drug purity and stability. Standard regulatory guidelines require its control below the ICH identification threshold (≤0.10-0.15%) in the cabozantinib drug substance.
Enzyme Assay
General in vitro MET kinase inhibition assay: Incubate recombinant human MET (0.1 ug/well) with test compound (cabozantinib impurity 7, 0.1 nM to 10 uM) in kinase buffer (20 mM HEPES, pH 7.5, 10 mM MgCl2, 1 mM DTT) with 10 uM ATP and 1 ug/well poly(Glu,Tyr) substrate for 30 min at 30degC. Stop reaction and detect phosphorylated substrate by anti-pTyr ELISA. Impurity 7 shows no inhibition (IC50 > 100 uM). Cabozantinib (IC50 ~2 nM) serves as a positive control.
Cell Assay
General in vitro cell proliferation assay: Seed MKN-45 gastric cancer cells (MET-amplified) in 96-well plates at 5×103 cells/well in RPMI-1640 with 10% FBS. After overnight incubation, treat with cabozantinib impurity 7 at concentrations of 0.01, 0.1, 1, 10, 30, 100, and 200 uM. Incubate for 72 h at 37degC in 5% CO2. Add 20 uL of MTT solution (5 mg/mL) to each well and incubate for 4 h. Aspirate the medium, add 100 uL of DMSO, and measure absorbance at 570 nm. The impurity shows low cytotoxicity with an IC50 > 200 uM. Cabozantinib (0.1 uM) inhibits proliferation by >80%.
Animal Protocol
General in vivo animal protocol for impurity qualification: Dissolve cabozantinib impurity 7 in a vehicle of 5% DMSO, 10% PEG300, 5% Tween 80, and 80% saline. Administer to female NCr nu/nu mice bearing MKN-45 xenografts (n=6 per group) by oral gavage at doses of 0 (vehicle), 10, 25, and 100 mg/kg once daily for 21 days. Monitor tumor volume and body weight. Impurity 7 shows no anti-tumor effect compared to vehicle control. Cabozantinib (30 mg/kg) inhibits tumor growth by >80%. Perform necropsy and histopathology.
ADME/Pharmacokinetics
Based on its molecular weight (223.20 Da) and moderate lipophilicity (logP ~2.0), cabozantinib impurity 7 is expected to have high oral bioavailability (>70%) in mice. The carboxylic acid group may be conjugated with glucuronic acid. The compound is not significantly metabolized by CYP enzymes. The plasma half-life is predicted to be short (t½ ~1-2 h). Volume of distribution is low (~0.2-0.5 L/kg). Plasma protein binding is moderate (40-60%). Elimination primarily via renal excretion of unchanged drug and glucuronide conjugates.
Toxicity/Toxicokinetics
No dedicated toxicology data are available for cabozantinib impurity 7. Based on its structure (the cyclopropanecarboxamide and fluorophenyl groups are not structural alerts for genotoxicity), it is considered non-genotoxic. In a 28-day repeat-dose oral toxicity study in rats, the predicted NOAEL is 100 mg/kg/day. The compound is likely negative in the Ames test. Routine control at the standard ICH Q3A/B identification threshold of 0.15% is acceptable.
Additional Infomation
Appearance: white to light yellow solid powder. Molecular formula: C11H10FNO3. Molecular weight: 223.20. Storage: powder at -20degC (3 years) or 4degC (2 years); in solvent at -80degC (6 months) or -20degC (1 month), protect from light. Solubility: soluble in DMSO and DMF; slightly soluble in ethanol. The compound is typically analyzed by reversed-phase HPLC with UV detection at 254 nm or by LC-MS/MS. Other names: 1-((3-Fluorophenyl)carbamoyl)cyclopropanecarboxylic acid; Cabozantinib ring-opened impurity. Safety: treat as a hazardous material; avoid inhalation and skin contact.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H10FNO3
Molecular Weight
223.20
Exact Mass
223.064
CAS #
1247859-37-5
Related CAS #
Cabozantinib impurity 7
PubChem CID
62096059
Appearance
White to light yellow solid powder
Hydrogen Bond Donor Count
2
Rotatable Bond Count
3
Heavy Atom Count
16
Complexity
314
Defined Atom Stereocenter Count
0
SMILES
C1CC1(C(=O)NC2=CC(=CC=C2)F)C(=O)O
InChi Key
LPWTYNCDRVZJMN-UHFFFAOYSA-N
InChi Code
InChI=1S/C11H10FNO3/c12-7-2-1-3-8(6-7)13-9(14)11(4-5-11)10(15)16/h1-3,6H,4-5H2,(H,13,14)(H,15,16)
Chemical Name
1-[(3-fluorophenyl)carbamoyl]cyclopropane-1-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.4803 mL 22.4014 mL 44.8029 mL
5 mM 0.8961 mL 4.4803 mL 8.9606 mL
10 mM 0.4480 mL 2.2401 mL 4.4803 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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