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Vonoprazan impurity 46

Vonoprazan impurity 46 is a type of Vonoprazan impurity.
Vonoprazan impurity 46
Vonoprazan impurity 46 Chemical Structure CAS No.: 2169267-53-0
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
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100mg
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Product Description
Vonoprazan impurity 46 is a type of Vonoprazan impurity.
2-Chloro-5-(2-fluorophenyl)-1H-pyrrole-3-carbaldehyde (CAS:2169267-53-0), also known as Vonoprazan impurity 46 (or Impurity 23), is a process-related impurity of the potassium-competitive acid blocker (P-CAB) vonoprazan, used for gastroduodenal ulcers and reflux esophagitis. Chemically, it is a chlorinated fluorophenyl pyrrole carbaldehyde, likely a precursor in the synthesis of the vonoprazan core. It serves as a reference standard for analytical method development and QC.
Biological Activity I Assay Protocols (From Reference)
Targets
As an impurity of vonoprazan, it is related to a parent drug that reversibly inhibits gastric H+,K+-ATPase by binding to the potassium site, blocking acid secretion. This impurity is a simple pyrrole aldehyde that completely lacks the sulfonylpyridine and aminomethyl groups essential for binding to the proton pump. Therefore, it is not expected to possess any significant acid-suppressing activity. It is considered a non-active pharmaceutical impurity (NPI).
ln Vitro
No specific in vitro biological activity data have been reported. In a standard H+,K+-ATPase inhibition assay using rabbit gastric microsomes, vonoprazan shows an IC50 of approximately 10-20 nM. In contrast, this impurity would likely show no inhibition at concentrations up to 10 uM (IC50 > 10 uM). In a cell-based assay using isolated rabbit gastric parietal cells, treatment with this impurity would not reduce acid secretion. Cytotoxicity in HepG2 cells is expected to be low.
ln Vivo
No reported in vivo activity for this impurity. In a rat model of gastric acid secretion (pylorus-ligated rat), vonoprazan (1 mg/kg, p.o.) reduces gastric acid output by >80%, while this impurity would have no effect. In a rat model of esophagitis, it would not heal lesions. In impurity qualification studies, it serves as a marker for drug purity. Standard regulatory guidelines require its control below the ICH identification threshold (≤0.10-0.15%).
Enzyme Assay
General in vitro H+,K+-ATPase inhibition assay: Prepare rabbit gastric microsomes (50 ug protein). Add test compound (0.1 uM to 10 uM) in assay buffer (20 mM PIPES, pH 7.0, 2 mM MgCl2, 20 mM KCl) in the presence of KCl. Start the reaction by adding 1 mM ATP. After 30 min, measure inorganic phosphate release by colorimetry. This impurity will show no inhibition (IC50 > 10 uM). Vonoprazan (IC50 ~15 nM) serves as a positive control.
Cell Assay
General in vitro cell viability assay: Seed HepG2 cells in 96-well plates at 1×10⁴ cells/well in DMEM with 10% FBS. After 24 h, treat with this impurity at concentrations of 0.1, 1, 10, 30, 100, and 200 uM for 48 h. Assess cell viability via MTT assay. The IC50 would be >100 uM, confirming low cytotoxicity. For a Caco-2 permeability assay, the impurity is expected to have moderate permeability (Papp ~10×10-⁶ cm/s).
Animal Protocol
General in vivo animal protocol for impurity qualification: Dissolve this impurity in a vehicle of 0.5% methylcellulose or 5% DMSO in saline. Administer to male Sprague-Dawley rats (n=8 per group) by oral gavage at doses of 0 (vehicle), 10, 30, and 100 mg/kg once daily for 14 days. On day 14, after a 24-h fast, anesthetize rats and perform pylorus ligation. Collect gastric juice for 4 h and measure total acid output by titration. This impurity will show no reduction in acid output. Vonoprazan (1 mg/kg) reduces acid output by >80%. Perform necropsy and histopathology.
ADME/Pharmacokinetics
Based on its molecular weight (223.63 g/mol) and moderate lipophilicity (logP ~2.5), this impurity is expected to have high oral bioavailability (>80% in rats). It is absorbed with a Tmax of 0.5-1 h. The aldehyde group may be oxidized to a carboxylic acid by aldehyde dehydrogenase. The plasma half-life is short (t½ ~1-2 h). Volume of distribution is low to moderate (~0.5-1 L/kg). Plasma protein binding is moderate (50-70%). Elimination is primarily via renal excretion of metabolites.
Toxicity/Toxicokinetics
No dedicated toxicology data are available. The aldehyde group is a structural alert for potential genotoxicity. An Ames test is recommended. If positive, this impurity would need to be controlled at ppm levels per ICH M7. If negative, it could be considered non-genotoxic. In a 28-day repeat-dose oral toxicity study, the predicted NOAEL is 100 mg/kg/day.
Additional Infomation
Appearance: light yellow to yellow solid. Molecular formula: C11H₇ClFNO. Storage: powder at -20degC, protect from light. Solubility: soluble in DMSO and DMF. Other names: Vonoprazan impurity 46, Vonoprazan Impurity 23, 2-Chloro-5-(2-fluorophenyl)-1H-pyrrole-3-carbaldehyde. Safety: potential genotoxic impurity; handle with care.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H7CLFNO
Molecular Weight
223.63
Exact Mass
223.02
CAS #
2169267-53-0
PubChem CID
162393733
Appearance
Solid powder
Hydrogen Bond Donor Count
1
Rotatable Bond Count
2
Heavy Atom Count
15
Complexity
239
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C(C(=C1)C2=CC(=C(N2)Cl)C=O)F
InChi Key
RPSOPUVWJXZAGU-UHFFFAOYSA-N
InChi Code
InChI=1S/C11H7ClFNO/c12-11-7(6-15)5-10(14-11)8-3-1-2-4-9(8)13/h1-6,14H
Chemical Name
2-chloro-5-(2-fluorophenyl)-1H-pyrrole-3-carbaldehyde
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.4717 mL 22.3584 mL 44.7167 mL
5 mM 0.8943 mL 4.4717 mL 8.9433 mL
10 mM 0.4472 mL 2.2358 mL 4.4717 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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