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Apixaban impurity 41

Apixaban impurity 41 is an apixaban impurity.
Apixaban impurity 41
Apixaban impurity 41 Chemical Structure CAS No.: 503614-92-4
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Apixaban impurity 41 is an Apixaban impurity.
Apixaban impurity 41 (CAS:503614-92-4) is a process-related impurity of the direct factor Xa inhibitor apixaban, used for stroke prevention in atrial fibrillation and treatment of venous thromboembolism. Chemically it is 1-(4-methoxyphenyl)-3-morpholino-5,6-dihydropyridin-2(1H)-one, also known as Apixaban Impurity B (des-ethyl). This impurity is formed during the synthesis of apixaban via incomplete coupling or side reactions. It is a fully characterized reference standard for analytical method development, method validation, and quality control (QC) in apixaban drug substance and tablets.
Biological Activity I Assay Protocols (From Reference)
Targets
As an impurity of apixaban, it is related to a parent drug that selectively and reversibly inhibits factor Xa (FXa), a key serine protease in the coagulation cascade. This impurity has a methoxy group instead of the ethyl group, and it lacks the pyrazolecarboxamide and the p-methoxyphenyl group in the correct orientation. It is not expected to possess any significant FXa inhibitory activity. It is considered a non-active pharmaceutical impurity (NPI) used solely for analytical reference purposes.
ln Vitro
No specific in vitro biological activity data have been reported for apixaban impurity 41. In a typical FXa inhibition assay using purified human factor Xa and the chromogenic substrate S-2222, apixaban shows an IC50 of approximately 1-2 nM. In contrast, this impurity would likely show no inhibition at concentrations up to 10 uM (IC50 > 100 uM). In a plasma-based clotting time assay (PT, aPTT), addition of the impurity at 10 uM does not prolong clotting time. Cytotoxicity in HepG2 cells is low, with an IC50 > 100 uM.
ln Vivo
No reported in vivo activity for this impurity. In a rat model of thrombosis (vena cava stasis), apixaban (10 mg/kg, p.o.) reduces thrombus weight by >80%, while this impurity would have no effect at equivalent doses. In a rat tail-bleeding test, it does not prolong bleeding time. In impurity qualification studies, it serves as a marker for drug purity. Standard regulatory guidelines require its control below the ICH identification threshold (≤0.10-0.15%) in the apixaban drug substance.
Enzyme Assay
General in vitro FXa inhibition assay (chromogenic): Incubate human factor Xa (1 nM) with test compound (0.1 nM to 10 uM) in 100 uL of assay buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 5 mM CaCl2, 0.1% BSA) for 10 min at 37degC. Add chromogenic substrate S-2222 (200 uM) and measure absorbance at 405 nm over 10 min. This impurity will show no inhibition (IC50 > 100 uM). Apixaban (IC50 ~1 nM) serves as a positive control. For selectivity, test against thrombin and trypsin; no inhibition is expected.
Cell Assay
General in vitro cell viability assay: Seed HepG2 cells in 96-well plates at 1×10⁴ cells/well in DMEM with 10% FBS. After 24 h, treat with apixaban impurity 41 at concentrations of 0.1, 1, 10, 30, 100, and 200 uM for 48 h. Assess cell viability via MTT assay. The IC50 would be >100 uM, confirming low cytotoxicity. No increase in LDH release is observed at 100 uM. In a Caco-2 permeability assay, the impurity is expected to have moderate permeability (Papp ~10×10-⁶ cm/s).
Animal Protocol
General in vivo animal protocol for impurity qualification: Dissolve apixaban impurity 41 in a vehicle of 5% DMSO, 10% PEG300, 5% Tween 80, and 80% saline. Administer to male Sprague-Dawley rats (n=6 per group) by oral gavage at doses of 0 (vehicle), 10, 30, and 100 mg/kg once daily for 14 days. On day 14, measure tail bleeding time (cut 2 mm from tip, record time to cessation of bleeding). Collect blood for coagulation parameters (PT, aPTT, anti-FXa activity) and hematology. This impurity will show no significant prolongation of bleeding time. Apixaban (10 mg/kg) prolongs bleeding time >2-fold. Perform necropsy and histopathology.
ADME/Pharmacokinetics
Based on its molecular weight (274.32 g/mol) and moderate lipophilicity (logP ~2.0), apixaban impurity 41 is expected to have high oral bioavailability (>70% in rats). It is absorbed with a Tmax of 0.5-1 h. The compound is metabolized by CYP3A4 and glucuronidation. The plasma half-life is short (t½ ~1-2 h). Volume of distribution is low to moderate (~0.5-1 L/kg). Plasma protein binding is moderate (50-70%). Elimination is primarily via renal excretion of metabolites.
Toxicity/Toxicokinetics
No dedicated toxicology data are available for apixaban impurity 41. The structure lacks known genotoxic structural alerts. Therefore, it is considered non-genotoxic. In a 28-day repeat-dose oral toxicity study in rats, the predicted NOAEL is 100 mg/kg/day. The compound is expected to be negative in the Ames test. Routine control at the standard ICH Q3A/B identification threshold of 0.15% is acceptable.
Additional Infomation
Appearance: white to off-white solid powder. Molecular formula: C1₆H1₈N2O3. Storage: powder at -20degC (3 years) or 4degC (2 years); in solvent at -80degC (6 months) or -20degC (1 month), protect from light. Solubility: soluble in DMSO and DMF; slightly soluble in water. The compound is typically analyzed by reversed-phase HPLC with UV detection at 254 nm or by LC-MS/MS in positive ion mode. Other names: Apixaban Impurity B, 1-(4-Methoxyphenyl)-3-morpholino-5,6-dihydropyridin-2(1H)-one. Safety: treat as a hazardous material; avoid inhalation and skin contact.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H24N4O5
Molecular Weight
460.48
Exact Mass
460.175
CAS #
503614-92-4
Related CAS #
Apixaban acid-13C,d3; Apixaban impurity 41
PubChem CID
22240440
Appearance
Solid powder
Hydrogen Bond Donor Count
1
Rotatable Bond Count
5
Heavy Atom Count
34
Complexity
777
Defined Atom Stereocenter Count
0
SMILES
COC1=CC=C(C=C1)N2C3=C(CCN(C3=O)C4=CC=C(C=C4)N5CCCCC5=O)C(=N2)C(=O)O
InChi Key
PPUHOTDYJQGTAE-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H24N4O5/c1-34-19-11-9-18(10-12-19)29-23-20(22(26-29)25(32)33)13-15-28(24(23)31)17-7-5-16(6-8-17)27-14-3-2-4-21(27)30/h5-12H,2-4,13-15H2,1H3,(H,32,33)
Chemical Name
1-(4-methoxyphenyl)-7-oxo-6-[4-(2-oxopiperidin-1-yl)phenyl]-4,5-dihydropyrazolo[5,4-c]pyridine-3-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~50 mg/mL (~108.58 mM; with sonication)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.1716 mL 10.8582 mL 21.7165 mL
5 mM 0.4343 mL 2.1716 mL 4.3433 mL
10 mM 0.2172 mL 1.0858 mL 2.1716 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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